Locus 7934

Sequence ID 3L_DroMel_CAF1
Location 21,066,844 – 21,066,964
Length 120
Max. P 0.941333
window12939

overview

Window 9

Location 21,066,844 – 21,066,964
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -38.16
Consensus MFE -33.86
Energy contribution -33.30
Covariance contribution -0.56
Combinations/Pair 1.16
Mean z-score -1.58
Structure conservation index 0.89
SVM decision value 1.32
SVM RNA-class probability 0.941333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21066844 120 + 23771897
UCGAAGGCAAGUGCAGGUGGCGCCACCCCGGUUCCCAGCAAAUCGCAGACCACCAACAAUCCCUGGCUGGAUCUUUUCGCCGACUUGGAUCCCUUAGCCAAUCCGCAAGCCUUCGAUUUA
((((((((...(((.(((((((((.....))).....((.....)).).))))).........(((((((((((............))))))...)))))....))).)))))))).... ( -43.10)
>DroSec_CAF1 122158 120 + 1
UCCAAGGCAAGUGGAGGUGGCGCCACCCCGGUUCCCAGCAAAUCGCAGUCCACCAACAAUCCCUGGCUGGAUCUCUUCGCCGACUUGGAUCCCUUAGCCAAUCCGCAAGCCUUCGAUUUG
((.(((((..((((((((((((((.....))).....((.....)).).))))).........(((((((((((............))))))...))))).)))))..))))).)).... ( -40.10)
>DroSim_CAF1 28407 120 + 1
UCCAAGGCAAGUGGAAGUGGCACCACCCCGGUUCCCAGCAAAUCGCAGUCCACCAACAAUCCCUGGCUGGAUCUCUUCGCCGACUUGGAUCCCUUAGCCAAUCCGCAAGCCUUCGAUUUG
((.(((((..(((((.((((((((.....))).....((.....)).).))))..........(((((((((((............))))))...))))).)))))..))))).)).... ( -35.60)
>DroEre_CAF1 44777 120 + 1
UCCAAGGCAAGUGGAGGUGGCGCCACCGCGGCUCCCAGCAAAUCGCAGUCCACCAACAAUCCCUGGCUGGAUCUUUUCGCCGACUUGGAUCCGUUAGCCAAUAUGCAAGCCUUCGAUUUG
((.(((((..(((((((((....))))(((((.....))....)))..)))))..........(((((((((((............))))))...)))))........))))).)).... ( -38.80)
>DroYak_CAF1 15228 120 + 1
UCCAAGGCAAGUGCAGGUGGCGCCACCCCGGUUCCCAGCAAAUCGCAGUCUACUAACAAUCCCUGGCUGGAUCUUUUCGCCGACUUGGAUCCCUUAGCCAAUCCGCAAGCCUUCGAUUUG
((.(((((...(((.((((....))))..((......((.....)).................(((((((((((............))))))...)))))..))))).))))).)).... ( -33.20)
>consensus
UCCAAGGCAAGUGGAGGUGGCGCCACCCCGGUUCCCAGCAAAUCGCAGUCCACCAACAAUCCCUGGCUGGAUCUUUUCGCCGACUUGGAUCCCUUAGCCAAUCCGCAAGCCUUCGAUUUG
((.(((((..(((..(((((((((.....))).....((.....)).).))))).........(((((((((((............))))))...)))))...)))..))))).)).... (-33.86 = -33.30 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:19 2006