Locus 7933

Sequence ID 3L_DroMel_CAF1
Location 21,066,684 – 21,066,804
Length 120
Max. P 0.641396
window12938

overview

Window 8

Location 21,066,684 – 21,066,804
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.25
Mean single sequence MFE -36.82
Consensus MFE -32.92
Energy contribution -33.36
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.22
Structure conservation index 0.89
SVM decision value 0.22
SVM RNA-class probability 0.641396
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21066684 120 - 23771897
UGGCUAAACAAGCGGGACCAUAGCUUGUUAGUGCUAUUUUGGGCAGGUAUAUCUUCAUCCAGCGGCGCAUCUAUUAGAGGACUGUCCUCCAGCUGCUUGGAAAGCUCAAUAAGCAAGGAU
..(((((.(((((.........))))))))))(((...((((((.((.......)).(((((((((..........((((.....))))..))))).))))..))))))..)))...... ( -36.90)
>DroSec_CAF1 121998 120 - 1
UGGCUAAACAAGCGGGACCAUAGCUUGUUACUGCUAUUUUGGGCAGGUAUAUCUUCAUCCAGCGGCGCAUCUAUAAGCGGACUGUCCUCCAGCUGCUUAGAAAGCUCAAUAAGCAAGGAU
......(((((((.........))))))).(((((......)))))..........((((((((((((........))(((......))).))))))......(((.....)))..)))) ( -33.90)
>DroSim_CAF1 28247 120 - 1
UGGCUAAACAAGCGGGACCAUAGCUUGUUACUGCUAUUUUGGGCAGGUAUAUCUUCAUCCAGCGGCGCAUCUAUAAGCGGACUGUCCUCCAGCUGCUUGGAAAGCUCAAUAAGCAAGGAU
......(((((((.........)))))))..((((...((((((.((.......)).(((((((((((........))(((......))).))))).))))..))))))..))))..... ( -36.90)
>DroEre_CAF1 44617 120 - 1
UGGCUAAACAAGCGCGACCAUAGCUUGUUACUGCUAUUUUGGGCAGGUAUUUCUUCAUCCAACGGCGCAUCAAUAAGCGGGCUGUCCUCCAGCUGCUUGGAAAGCUCAAUUAGCAAGGAU
......(((((((.........)))))))..(((((..(((((((((....)))...(((((((((((........))(((......))).)))).)))))..)))))).)))))..... ( -35.60)
>DroYak_CAF1 15068 120 - 1
UGGCUAAACAAGCGCGACCAUAGCUUGUUGCUGCUAUUUUGGGCAGGUAUUUCUUCAUCCAGCGGCGCAUCGAUAAGCGGACUGUCCUCCAGCUGCUUGGAGAGCUCAAUUAGCAAGGAU
.(((..(((((((.........))))))))))((((..(((((((((....)))((.(((((((((((........))(((......))).))))).)))))))))))).))))...... ( -40.80)
>consensus
UGGCUAAACAAGCGGGACCAUAGCUUGUUACUGCUAUUUUGGGCAGGUAUAUCUUCAUCCAGCGGCGCAUCUAUAAGCGGACUGUCCUCCAGCUGCUUGGAAAGCUCAAUAAGCAAGGAU
......(((((((.........)))))))..((((...((((((.((.......)).(((((((((((........))(((......))).))))).))))..))))))..))))..... (-32.92 = -33.36 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:18 2006