Locus 7932

Sequence ID 3L_DroMel_CAF1
Location 21,066,284 – 21,066,404
Length 120
Max. P 0.611661
window12937

overview

Window 7

Location 21,066,284 – 21,066,404
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.08
Mean single sequence MFE -29.94
Consensus MFE -28.66
Energy contribution -29.06
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.10
Structure conservation index 0.96
SVM decision value 0.16
SVM RNA-class probability 0.611661
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21066284 120 + 23771897
CCAGAUUGAUUUACUAGCAGCUGCCCGAUGCAACAUGUACUCCCAUGCUCUGGUGGCCUACGUUACCGAGUUGAAGAACUUUGCCCAGAAGGCCGCCUCCACAUUCCAGACCAUAUCUAA
..((((((........(((..(((.....)))...))).((...(((....((((((((.(....(.(((((....))))).)....).))))))))....)))...))..)).)))).. ( -24.70)
>DroSec_CAF1 121598 120 + 1
CCAGAUUGAUUUACUAGCAGCUGCCCGCUGCAACAUGUAUUCCCAUGCUCUGGUGGCCUACGUAACCGAGUUGAAGAACUUUGCCCAGAAGGCCGCCUCCACAUUCCAGACCAUAUCCAA
...((.((........(((((.....)))))..((((......))))....((((((((.(....(.(((((....))))).)....).))))))))....)).)).............. ( -30.10)
>DroSim_CAF1 27847 120 + 1
CCAGAUUGAUUUACUAGCAGCUGCCCGCUGCAACAUGUAUUCCCAUGCUCUGGUGGCCUACGUAACCGAGUUGAAGAACUUUGCCCAGAAGGCCGCCUCCACAUUCCAGACCAUAUCCAA
...((.((........(((((.....)))))..((((......))))....((((((((.(....(.(((((....))))).)....).))))))))....)).)).............. ( -30.10)
>DroEre_CAF1 44217 120 + 1
CCAGAUUGAUUUACUAGCAGCUGCCCGCUGCAACAUGUAUUCCCAUGCUCUGGUGGCCUACGUCACGGAGUUAAAGAACUUUGCCCAAAAGGCCGCCUCCACAUUCCAGACCAUAUCCAA
...((.((........(((((.....)))))..((((......))))....((((((((......(((((((....)))))))......))))))))....)).)).............. ( -31.90)
>DroYak_CAF1 14668 120 + 1
CCAGAUUGAUUUACUAGCAGCUGCCCGCUGCAACAUGUAUUCCCAUGCCCUGGUGGCCUACGUAACGGAGUUAAAAAACUUUGCACAGAAGGCCGCCUCCACAUUCCAGACCAUAUCCAA
...((.((........(((((.....)))))..((((......))))....((((((((.(....(((((((....)))))))....).))))))))....)).)).............. ( -32.90)
>consensus
CCAGAUUGAUUUACUAGCAGCUGCCCGCUGCAACAUGUAUUCCCAUGCUCUGGUGGCCUACGUAACCGAGUUGAAGAACUUUGCCCAGAAGGCCGCCUCCACAUUCCAGACCAUAUCCAA
...((.((........(((((.....)))))..((((......))))....((((((((.(....(..((((....))))..)....).))))))))....)).)).............. (-28.66 = -29.06 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:17 2006