Locus 7930

Sequence ID 3L_DroMel_CAF1
Location 21,065,499 – 21,065,617
Length 118
Max. P 0.940578
window12930

overview

Window 0

Location 21,065,499 – 21,065,617
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.90
Mean single sequence MFE -41.77
Consensus MFE -36.16
Energy contribution -35.10
Covariance contribution -1.06
Combinations/Pair 1.25
Mean z-score -2.10
Structure conservation index 0.87
SVM decision value 1.31
SVM RNA-class probability 0.940578
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21065499 118 - 23771897
CAGUUUUCAGCUACGGGUGAUUUUUCACCACUGAGUGGUUGUUUAGGAGGGUGGUUGG--GUGGUGGGGUGGCGCUGUAUCGUUAUUUUCCAAUGCUUAUCGCCUUUCGAUUGCAAUCGU
.....(((((.....(((((....))))).))))).((((((...((((((((((.((--((..((((((((((......))))))..))))..))))))))))))))....)))))).. ( -40.70)
>DroSec_CAF1 120809 118 - 1
CAGUUUUCAACUACGGGUGAUUUUUCGCCACUGAGUGGUUGUUUAGGGGGGCGGUUGG--GUGGUGGGGUGGCGCUGUAUCGUUAUUUUCCACUGUCUGUCGCCUUUCGAUUCCAAUCGG
.......(((((((.(((((....))))).....)))))))....(..(((((...((--(..(((((((((((......))))))..)))))..)))..)))))..)(((....))).. ( -43.20)
>DroSim_CAF1 27059 118 - 1
CAGUUUUCAGCUACGGGUGAUUUUUCGCCACUGAGUGGUUGUUUAGGGGGGCGGUUGG--GUGGUGGGGUGGCGCUGUAUCGUUAUUUUCCACUGUCUAUCGCCUUUCGAUUCCAAUCGG
.......(((((((.(((((....))))).....)))))))....(..(((((((.((--(..(((((((((((......))))))..)))))..))))))))))..)(((....))).. ( -46.30)
>DroYak_CAF1 13868 120 - 1
CAGUUUUUAGCUACGGAUGAUUUUUCGUCACUGGGUGGUUGUUUAAGGGGGCGGUUGGUGGCGGUGGGGUGGUGCUGUCUCGUUAUUUUCCACUGUCUAUCGCCAUUCGAUUUCAAUCGG
.........(((...(((((....)))))....)))(((((.....(((((((((....((((((((((....((......))....)))))))))).)))))).))).....))))).. ( -36.90)
>consensus
CAGUUUUCAGCUACGGGUGAUUUUUCGCCACUGAGUGGUUGUUUAGGGGGGCGGUUGG__GUGGUGGGGUGGCGCUGUAUCGUUAUUUUCCACUGUCUAUCGCCUUUCGAUUCCAAUCGG
.......(((((((.(((((....))))).....)))))))....((((((((((.((..((((.(((((((((......)))))))))))))..)).))))))))))(((....))).. (-36.16 = -35.10 +  -1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:10 2006