Locus 7929

Sequence ID 3L_DroMel_CAF1
Location 21,064,997 – 21,065,117
Length 120
Max. P 0.997163
window12929

overview

Window 9

Location 21,064,997 – 21,065,117
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -34.48
Consensus MFE -32.12
Energy contribution -31.96
Covariance contribution -0.16
Combinations/Pair 1.09
Mean z-score -2.03
Structure conservation index 0.93
SVM decision value 2.81
SVM RNA-class probability 0.997163
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21064997 120 - 23771897
UAAAAUAAUGCGGGCACAACAAGUUCGAAGCGAACUGUUGGCGUCCAACAAACCUGACAGAGGAAAUGCUAUGUGGGAAAAGUGAAGUUCAGAUAUAGUAUCUCGUUCGCGAUUCAGAUC
........(((((((.(((((.(((((...))))))))))..)))).............(((((.(((((((((..(((........)))..))))))))).)).))))))......... ( -32.30)
>DroSec_CAF1 120010 120 - 1
UAAAAUAAUGCGGGCACAACAAGUUCGAAGCGAACUGUCGGCGUCAAACGAAGCUGACAGAGGAAAUGCUGUGUGGGAAAAGUGAAGUUCAGAUAUAGUAUCUCGUUCGCGAUUCAGAUC
..........(((((.......)))))..(((((((((((((.((....)).)))))))(((...(((((((((..(((........)))..)))))))))))))))))).......... ( -36.90)
>DroSim_CAF1 26268 120 - 1
UAAAAUAAUGCGGGCACAACAAGUUCGAAGCGAACUGUCGGCGUCAAACGAAGCUGACAGAGGAAAUGCUGUGUGGGAAAAGUGAAGUUCAGAUAUAGUAUCUCGUUCGCGAUUCAGAUC
..........(((((.......)))))..(((((((((((((.((....)).)))))))(((...(((((((((..(((........)))..)))))))))))))))))).......... ( -36.90)
>DroEre_CAF1 42863 120 - 1
UAAAAUAAUGCGGGCACAACAAGUUCGAAGCGAACUGUCUGCGUCAAACGAAGCUGGCAGAGGAAAUGCUGUGUGGGAAAAGUGAAGUUCAGAUAUAGUAUCUCGUUCGCGAUUCAGAUC
..........(((((.......)))))..((((((((((.((.((....)).)).))))(((...(((((((((..(((........)))..)))))))))))))))))).......... ( -32.40)
>DroYak_CAF1 13282 120 - 1
UAAAAUAAUGCGGGCACAACAAGUUCGAAGCGAACCGUCGGCGUCAAACAAAGCUGGCAGAGGAAAUGCUGUGUGGGAAAAGUGAAGUUCAGAUAUAGUAUCUCGUUCGCGAUUCAGAUC
..........(((((.......)))))..((((((.((((((..........)))))).(((...(((((((((..(((........)))..)))))))))))))))))).......... ( -33.90)
>consensus
UAAAAUAAUGCGGGCACAACAAGUUCGAAGCGAACUGUCGGCGUCAAACGAAGCUGACAGAGGAAAUGCUGUGUGGGAAAAGUGAAGUUCAGAUAUAGUAUCUCGUUCGCGAUUCAGAUC
..........(((((.......)))))..((((((.((((((..........)))))).(((...(((((((((..(((........)))..)))))))))))))))))).......... (-32.12 = -31.96 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:08 2006