Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,063,712 – 21,063,831 |
Length | 119 |
Max. P | 0.613545 |
Location | 21,063,712 – 21,063,831 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -27.64 |
Energy contribution | -27.52 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.91 |
Structure conservation index | 0.75 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21063712 119 + 23771897 GCUAACAAGAUGCUCGCUUGCAUUAAACAAUUGUUGGCUUGUUGUUGCUGUUUGCUCAGCUCAGCCCAAGGCGGCCCAUUAAAACGCUUAGCAAGCA-GCAAGUGCCGUGACCUUUUUCC (((((((((((((......)))))......))))))))..((..((((((((((((.(((...(((...)))(...........)))).))))))))-))))..)).............. ( -37.60) >DroSec_CAF1 118632 119 + 1 GCUAACAAGGUGCUCGCUUGCAUUAAACAAUUGUUGGCUUGUUGUUGCUGUUUGCUCAGCUCAGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCA-GCAAGUGCCGUGACCUUUUUCC (((((((((((((......)))))......))))))))..((..((((((((((((.((((..(((......))).........)))).))))))))-))))..)).............. ( -37.50) >DroSim_CAF1 24879 119 + 1 GCUAACAAGGUGCUCGCUUGCAUUAAACAAUUGUUGGCUUGUUGUUGCUGUUUGCUCAGCUCAGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCA-GCAAGUGCCGUGACCUUUUUCC (((((((((((((......)))))......))))))))..((..((((((((((((.((((..(((......))).........)))).))))))))-))))..)).............. ( -37.50) >DroEre_CAF1 41511 114 + 1 GCUAACAAGGUGCUCGCUUGCAUUAAACCAUUGUUGGUUUGUUGUUGCUGUUUGCUC-----AGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCA-GCAAGUGCCGUGACCUUUUUCC .....((.((..((.....(((.(((((((....))))))).)))(((((((((((.-----(((((.....))...........))).))))))))-)))))..)).)).......... ( -36.60) >DroYak_CAF1 11934 111 + 1 GCUAACAAGGUGCUCGCUUGCA----ACAAUUGUUGGUUUUUUGUUGCUGUUUGUUC-----AGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCAAGCAAGUGCCGUGACCUUUUUCC .....((.((..((.((((((.----....((((((((((((((..(((((((....-----......)))))))....)))))))).)))))))))))).))..)).)).......... ( -34.70) >consensus GCUAACAAGGUGCUCGCUUGCAUUAAACAAUUGUUGGCUUGUUGUUGCUGUUUGCUCAGCUCAGCCCAAGGCGGCCCAUUAAAAAGCUUAGCAAGCA_GCAAGUGCCGUGACCUUUUUCC (((((((((((((......)))))......))))))))......((((((((((((.......(((...)))(((..........))).)))))))).)))).................. (-27.64 = -27.52 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:05 2006