Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,061,487 – 21,061,601 |
Length | 114 |
Max. P | 0.565720 |
Location | 21,061,487 – 21,061,601 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.34 |
Mean single sequence MFE | -29.54 |
Consensus MFE | -26.36 |
Energy contribution | -26.76 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.16 |
Structure conservation index | 0.89 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21061487 114 - 23771897 UUUUUUGGCGGCGAUUGUGCAAUCGCAGCUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUCUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAAC------AACAA (((.(((((.((((((....))))))((........)).))))).)))....((((((..((....)).....(((((.((.....)))))))....))))))......------..... ( -29.30) >DroSec_CAF1 116447 117 - 1 ---UUUGGCGGCGAUUAUGCAAUCGCAGGUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUCUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACAGCAACAACAA ---.(((((.((((((....)))))).(((.....))).)))))...........((((((...........))))))(((((..((((((......)))))).....)))))....... ( -31.20) >DroSim_CAF1 22614 117 - 1 ---UUUGGCGGCGAUUAUGCAAUCGCAGGUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUCUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACAGCAACAACAA ---.(((((.((((((....)))))).(((.....))).)))))...........((((((...........))))))(((((..((((((......)))))).....)))))....... ( -31.20) >DroEre_CAF1 39351 114 - 1 ---UUUGGCGGCGAUUAUGCAAUCGAAGCUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUGUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACA---ACAACAA ---.((((((((((((..((.......))..(((......)))...)))).....((((((..((....)).)))))).))))).((((((......)))))).....))---)...... ( -27.90) >DroYak_CAF1 9857 111 - 1 ---UUUGGCGGCGAUUAUGCAAUCGAAGCUGUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUGUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACA---A---CAA ---.((((((((((((....))))..((((.(((......)))............(((((((....))..)))))))))))))).((((((......)))))).....))---)---... ( -28.10) >consensus ___UUUGGCGGCGAUUAUGCAAUCGCAGCUCUGGAACUAGCCAAUAAAUCAAAAUGCCAUUCUCAAGACUCUGGUGGCUGCUGCAAGUGCCACAUGCGGCAUUAAAAACA___ACAACAA ....(((((.((((((....))))))((........)).)))))........((((((..((....)).....(((((.((.....)))))))....))))))................. (-26.36 = -26.76 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:02 2006