Locus 7924

Sequence ID 3L_DroMel_CAF1
Location 21,060,694 – 21,060,813
Length 119
Max. P 0.925038
window12922

overview

Window 2

Location 21,060,694 – 21,060,813
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.24
Mean single sequence MFE -41.76
Consensus MFE -37.90
Energy contribution -37.78
Covariance contribution -0.12
Combinations/Pair 1.06
Mean z-score -1.57
Structure conservation index 0.91
SVM decision value 1.17
SVM RNA-class probability 0.925038
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21060694 119 + 23771897
GGGUUAACUGAGUGCAGAGCCGAGAACCGGCGACAACUCGGACGACUCAAUAAACUAGCU-UUUGUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUUCUGCGAUUGUGCAAU
..(((..((((((.....((((.....))))....)))))).((..(((((((.(((((.-...))))).)))))))...)).)))(((......)))(((((.((...)).)))))... ( -41.20)
>DroSec_CAF1 115666 119 + 1
GGGUUAACUGAGUGCAGAGCCGAGAACCGGCGACAACUCGGACGACUCAAUAAACUAGCU-UUUGUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUUCUGCGAUUGUGCAAU
..(((..((((((.....((((.....))))....)))))).((..(((((((.(((((.-...))))).)))))))...)).)))(((......)))(((((.((...)).)))))... ( -41.20)
>DroSim_CAF1 21949 119 + 1
GGGUUAACUGAGUGCAGAGCCGAGAACCGGCGACAACUCGGACGACUCAAUAAACUAGCU-UUUGUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUUCUGCGAUUGUGCAAU
..(((..((((((.....((((.....))))....)))))).((..(((((((.(((((.-...))))).)))))))...)).)))(((......)))(((((.((...)).)))))... ( -41.20)
>DroEre_CAF1 38598 119 + 1
GGGUUAACUGAGUGCAGAGCCCAGAACCGGCGUCAACUCGGACGACUCAAUAAACUAGCUCUUUGUUGGCUUAUUGACAGCGGGGC-GCAGGACAGUCGCACAUUCUGCGAUUGUGCAAU
(((((..(((....)))))))).(..(((.((((......))))..(((((((.(((((.....))))).)))))))...)))..)-...(.(((((((((.....))))))))).)... ( -43.10)
>DroYak_CAF1 9281 120 + 1
GGGCUAACUGAGUGCAGAGCCGAGAACCGGCGUCAACUCGGACGACUCAAUAAACUAGCUUUUUGUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUUCUGCGAUUGUGCAAU
.((((..((((((.....((((.....))))....)))))).((..(((((((.(((((.....))))).)))))))...))(..(....)..)))))(((((.((...)).)))))... ( -42.10)
>consensus
GGGUUAACUGAGUGCAGAGCCGAGAACCGGCGACAACUCGGACGACUCAAUAAACUAGCU_UUUGUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUUCUGCGAUUGUGCAAU
.((((..((((((.....((((.....))))....)))))).((..(((((((.(((((.....))))).)))))))...))............))))(((((.((...)).)))))... (-37.90 = -37.78 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:01 2006