Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,059,564 – 21,059,681 |
Length | 117 |
Max. P | 0.790538 |
Location | 21,059,564 – 21,059,681 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -30.22 |
Energy contribution | -30.86 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.41 |
Structure conservation index | 0.87 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21059564 117 + 23771897 AAACAAAUCGCUGGCGAUUUUUCCCCUGCCUUUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGGGAAUCAAUAAAUUUGCUCAGGC---GGCAGUGGCUGCCACUUAAAGCCUGAUAG ....((((((....))))))(((((..((....))((((((..............))))))...))))).............((((((---...(((((...)))))....))))))... ( -34.24) >DroSec_CAF1 114568 115 + 1 AAACAAAUCGCUGGCGAUU-UUCCCCUGCCAGUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGC---GGCAGUGGCUGCCACUUA-AGCCUGAUAG ...(((((((((((((...-......)))))))).((((((..............))))))...............))))).((((((---...(((((...)))))..-.))))))... ( -35.84) >DroSim_CAF1 20835 116 + 1 AAACAAAUCGCUGGCGAUU-UUCCCCUGCCAGUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGC---GGCAGUGGCUGCCACUUAAAGCCUGAUAG ...(((((((((((((...-......)))))))).((((((..............))))))...............))))).((((((---...(((((...)))))....))))))... ( -35.14) >DroEre_CAF1 37096 117 + 1 AAACAAAUCGCUGGCGAUUUUUCCCCUGACAGUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGC---GGCAGUGGCUGCCUCUUAAAGCCUGAUAA ....((((((....)))))).........(((.((((((((..............))))))..(((((..(((.....)))....(((---(((....)))))))))))..))))).... ( -31.34) >DroYak_CAF1 7966 119 + 1 AAACAAAUCGCUGGCGAUU-UUCCCCUGCCAACGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGCGGCGGCAGUGGCUGCCUCUUAAAGCCUGAUAA ...(((((.(((..(.(((-(((((((((....)).)).))))))))...)..)))..(((...))).........))))).((((((((((((....)))))).......))))))... ( -37.11) >consensus AAACAAAUCGCUGGCGAUU_UUCCCCUGCCAGUGCGAGCGGGAAAGUAUAGAAAGCUGCUCAAUGAGAAUCAAUAAAUUUGCUCAGGC___GGCAGUGGCUGCCACUUAAAGCCUGAUAG ...(((((((((((((..........)))))))).((((((..............))))))...............))))).((((((...(((((...))))).......))))))... (-30.22 = -30.86 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:57 2006