Locus 7921

Sequence ID 3L_DroMel_CAF1
Location 21,059,091 – 21,059,211
Length 120
Max. P 0.929423
window12918

overview

Window 8

Location 21,059,091 – 21,059,211
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 99.33
Mean single sequence MFE -25.40
Consensus MFE -24.26
Energy contribution -24.46
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.96
SVM decision value 1.20
SVM RNA-class probability 0.929423
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21059091 120 + 23771897
UAAACAAAUAAAUUACAUGAAAGCGGCUGCCACAGUUUGAAUCUCUUCAACAAGAUAAUCACAAUGAAGCGGCACGAAAUGUGCAGCAAUGUGGCAUCCUCAUUAACCCUCCGAUUCCCC
......................(.((.((((((((((.(((....)))))).................((.((((.....)))).))..))))))).)).)................... ( -24.70)
>DroSec_CAF1 114096 120 + 1
UAAACAAAUAAAUUACAUGAAAGCGGCUGCCACAGUUUGAAUCGCUUCAACAAGAUAAUCACAAUGAAGCGGCACGAAAUGUGCAGCAAUGUGGCAUCCUCAUUAACCCUCCGAUUCCCC
......................(.((.(((((((........(((((((....(.....)....)))))))((((.....)))).....))))))).)).)................... ( -28.40)
>DroSim_CAF1 20363 120 + 1
UAAACAAAUAAAUUACAUGAAAGCGGCUGCCACAGUUUGAAUCUCUUCAACAAGAUAAUCACAAUGAAGCGGCACGAAAUGUGCAGCAAUGUGGCAUCCUCAUUAACCCUCCGAUUCCCC
......................(.((.((((((((((.(((....)))))).................((.((((.....)))).))..))))))).)).)................... ( -24.70)
>DroEre_CAF1 36635 120 + 1
UAAACAAAUAAAUUACAUGAAAGCGGCUGCCACAGUUUGAAUCUCUUCAACAAGAUAAUCACAAUGAAGCGGCACGAAAUGUGCAGCAAUGUGGCAUCCUCAUUAACCCUCCGAUUCCCC
......................(.((.((((((((((.(((....)))))).................((.((((.....)))).))..))))))).)).)................... ( -24.70)
>DroYak_CAF1 7487 120 + 1
UAAACAAAUAAAUUACAUGAAAGCGGCUGCCACAGUUUGAAUCUCCUCAACAAGAUAAUCACAAUGAAGCGGCACGAAAUGUGCAGCAAUGUGGCAUCCUCAUUAACCCUCCGAUUCCCC
......................(.((.(((((((...(((((((........))))..))).......((.((((.....)))).))..))))))).)).)................... ( -24.50)
>consensus
UAAACAAAUAAAUUACAUGAAAGCGGCUGCCACAGUUUGAAUCUCUUCAACAAGAUAAUCACAAUGAAGCGGCACGAAAUGUGCAGCAAUGUGGCAUCCUCAUUAACCCUCCGAUUCCCC
......................(.((.((((((((((.(((....)))))).................((.((((.....)))).))..))))))).)).)................... (-24.26 = -24.46 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:56 2006