Locus 7920

Sequence ID 3L_DroMel_CAF1
Location 21,058,129 – 21,058,249
Length 120
Max. P 0.976794
window12917

overview

Window 7

Location 21,058,129 – 21,058,249
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.00
Mean single sequence MFE -38.00
Consensus MFE -37.40
Energy contribution -37.24
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.59
Structure conservation index 0.98
SVM decision value 1.78
SVM RNA-class probability 0.976794
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21058129 120 - 23771897
AGUUAGUGCUUUCCCUUGAUGCAGAGCCACCCUCAACCUCUGGCCCCGUGGAAAACCACACAGCACUCAUGCGAGGCGGCUUAAUUAGCUCCAUGGGCUUUUCUGGCCUCCCUGGCAUCU
....((((((...........(((((...........))))).....((((....))))..)))))).((((.(((.((((..(..((((.....))))..)..))))..))).)))).. ( -37.60)
>DroSec_CAF1 113146 120 - 1
AGUUAGUGCUUUCCCUUGAUGCAGAGCCACCCGCAACCUCUGGCCCCGUGGAAAACCACACAGCACUCAUGCGAGGCGGCUUAAUUAGCUCCAUGGGCUUUUCUGGCCUCCCUGGCAUCU
....((((((...........(((((...........))))).....((((....))))..)))))).((((.(((.((((..(..((((.....))))..)..))))..))).)))).. ( -37.60)
>DroSim_CAF1 19394 120 - 1
AGUUAGUGCUUUCCCUUGAUUCAGAGCCACCCGCAACCUCUGGCCCCGUGGAAAACCACACAGCACUCAUGCGAGGCGGCUUAAUUAGCUCCAUGGGCUUUUCUGGCCUCCCUGGCAUCU
....((((((..........((((((...........))))))....((((....))))..)))))).((((.(((.((((..(..((((.....))))..)..))))..))).)))).. ( -37.80)
>DroEre_CAF1 35704 120 - 1
AGUUAGUGCUUUCCCUUGAUGCAGAGCCACCCCCAACCUCUGGCCCCGUGGAAAACCACACAGCACUCAUGCGAGGCGGCUUAAUUAGCUCCAUGGGCUUCUCUGGCCUCCCUGGCAUCU
....((((((...........(((((...........))))).....((((....))))..)))))).((((.(((.((((.....((((.....)))).....))))..))).)))).. ( -37.40)
>DroYak_CAF1 6499 120 - 1
AGUUAGUGCUUUCCCUUGAUGCAGAGCCACCCCCAAGCUCUGGCCCCGUGGAAAACCACACAGCACUCAUGCGAGGCGGCUUAAUUAGCUCCAUGGGCUUUUCUGGCCUCUCUGGCAUCU
....((((((...........((((((.........)))))).....((((....))))..)))))).((((.(((.((((..(..((((.....))))..)..)))).).)).)))).. ( -39.60)
>consensus
AGUUAGUGCUUUCCCUUGAUGCAGAGCCACCCCCAACCUCUGGCCCCGUGGAAAACCACACAGCACUCAUGCGAGGCGGCUUAAUUAGCUCCAUGGGCUUUUCUGGCCUCCCUGGCAUCU
....((((((...........(((((...........))))).....((((....))))..)))))).((((.(((.((((..(..((((.....))))..)..))))..))).)))).. (-37.40 = -37.24 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:55 2006