Locus 792

Sequence ID 3L_DroMel_CAF1
Location 2,365,420 – 2,365,530
Length 110
Max. P 0.548905
window1217

overview

Window 7

Location 2,365,420 – 2,365,530
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 92.16
Mean single sequence MFE -20.40
Consensus MFE -18.46
Energy contribution -18.10
Covariance contribution -0.36
Combinations/Pair 1.14
Mean z-score -1.14
Structure conservation index 0.90
SVM decision value 0.03
SVM RNA-class probability 0.548905
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2365420 110 - 23771897
GAUAGGGCAAAGAAAUUUAUAGUUGGGAAACUAUCCAUCAGAUACUACGAACAUACUUGACCCAUUAAGACCCACCAAACAAGCACACGCAAUGCAAAACGCAUUGAGAU
....(((..(((...((..(((((((....)))..........))))..))....)))..)))........................(.((((((.....)))))).).. ( -18.30)
>DroSec_CAF1 114188 110 - 1
GAUAGGGCAAAGAAAUUUAUAGUUAGGAAACUAUCCAUCAGAUACUACGAACCUACUUGACCCAUUAAGACCCACCAAACAGGCACACGCAAUGCAAAACGCAUUGGGAU
....(((..(((...((..(((((((....)))..........))))..))....)))..))).......(((.........((....))(((((.....)))))))).. ( -21.60)
>DroSim_CAF1 115257 110 - 1
GAUAGGGCAAAGAAAUUUAUAGUUGGGAAACUAACCAUCAGAUACUACGAACCUACUUGACCCAAUAAGACCCACCAAACAAGCACACGCAAUGCAAAACGCAUUGGGAU
....(((..(((.........(((((....)))))..((.........)).....)))..))).......(((.........((....))(((((.....)))))))).. ( -23.20)
>DroEre_CAF1 121455 107 - 1
AAUAGGGCAACGAAAUUUAUAGUUGGGAAACUAUCCAUCAGUUACUACGAGUAUACUUGACCCAUUAAGACC---CAAACGAGCACACGCAAUGCAAAACGCAUUGAGAU
....(((((((..........)))(((.((((.......))))....((((....)))).))).....).))---)...........(.((((((.....)))))).).. ( -20.00)
>DroYak_CAF1 118565 107 - 1
AAUAGGGCAACGAAAUUUAUAGUUGGGAAACUAUCCAUCAGAUACUACGGGUAUACUUGACCCAUUAAGACC---CAAACAAGCACACGCAAUGCAAAACGCAUUCAGAU
....(((((((..........))))(((.....)))............((((.......)))).......))---)......((....))(((((.....)))))..... ( -18.90)
>consensus
GAUAGGGCAAAGAAAUUUAUAGUUGGGAAACUAUCCAUCAGAUACUACGAACAUACUUGACCCAUUAAGACCCACCAAACAAGCACACGCAAUGCAAAACGCAUUGAGAU
....((((((.....((..(((((((....)))..........))))..)).....))).)))........................(.((((((.....)))))).).. (-18.46 = -18.10 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:17 2006