| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,056,944 – 21,057,064 |
| Length | 120 |
| Max. P | 0.913563 |
| Location | 21,056,944 – 21,057,064 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.77 |
| Mean single sequence MFE | -36.74 |
| Consensus MFE | -30.58 |
| Energy contribution | -31.22 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21056944 120 - 23771897 CCCGGAGAACCCGAUCCGCAGAAGUGGAGUUGGGUUUUAGAUUUGGCCGAGAGAGUCAAGUUGAGUUACGCGGCCACUAACACUAAGUUGAGUUACGCGGAGCCAAACUCGAUUUCAGUU .....((((((((((((((....))))).))))))))).....((((((.(.((.((.....)).)).).)))))).....(((((((((((((..((...))..)))))))))).))). ( -41.50) >DroSec_CAF1 111991 110 - 1 CCCGGUGAACCCGAUCCGCAGAAAUGGAGUUGGGUUUUAGAUUUGGCCGAGAGAGUCAAGUUGAGUUACGCGGCCACUAACACUAAGU----------GGAGCCAAACUCGAUUUCAGUU ......((((((((..(.((....)))..))))))))..(((((((((....).))))))))(((((..((..(((((.......)))----------)).))..))))).......... ( -35.90) >DroSim_CAF1 18241 110 - 1 CCCGGAGAACCCGAUCCGCAGAAAUGGAGUUGGGUUUUAGAUUUGGCCGAGAGAGUCAAGUUGAGUUACGCGGCCACUAACACUAAGU----------GGAGCCAAACUCGAUUUCAGUU .....(((((((((..(.((....)))..))))))))).(((((((((....).))))))))(((((..((..(((((.......)))----------)).))..))))).......... ( -37.30) >DroEre_CAF1 34630 104 - 1 GCCGGAGAACCCGAUCCGCAGAAGUGGAGUUGGGUUUGAGAUUUGGCCAAGAGAGUCAAGUUUAGUUACGCGGCCACU------AAGC----------AGAGCCAAACUCGAUUUCAGUU (((((((((((((((((((....))))).))))))))....))))))...((((.((.(((((.(((..((.......------..))----------..))).))))).)))))).... ( -33.40) >DroYak_CAF1 5445 104 - 1 GCCGGAGAACCCGAUCCGCAGAAGUGGAGUUGGGUUUUAGAUUUGGCCAAGAGAGUCAAGUUGAGUUACGCGGCCACU------AAGU----------AGAGCCAAACUCGAUUUCAGUU ((.(((........))))).(((((.(((((.(((((((....(((((..(.((.((.....)).)).)..)))))..------...)----------)))))).))))).))))).... ( -35.60) >consensus CCCGGAGAACCCGAUCCGCAGAAGUGGAGUUGGGUUUUAGAUUUGGCCGAGAGAGUCAAGUUGAGUUACGCGGCCACUAACACUAAGU__________GGAGCCAAACUCGAUUUCAGUU ..((((........))))..(((((.(((((.((((((.....((((((.(.((.((.....)).)).).))))))((.......))...........)))))).))))).))))).... (-30.58 = -31.22 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:54 2006