| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,055,036 – 21,055,155 |
| Length | 119 |
| Max. P | 0.885903 |
| Location | 21,055,036 – 21,055,155 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.50 |
| Mean single sequence MFE | -28.89 |
| Consensus MFE | -21.33 |
| Energy contribution | -22.77 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21055036 119 - 23771897 AAUUU-UCACUUUAAAUGAGUGGCAAAAGUCCCUGGCCAAGAGAAUCGGAAAACCUUUUCAAGUUCAUGGCUAGAAGCGUCGAACAACGAAACACAAACGACGCCCAAAGGCUACAAUUU .....-.............(((((........(((((((...((((..((((....))))..)))).)))))))..((((((................))))))......)))))..... ( -30.59) >DroSec_CAF1 110037 119 - 1 AAUUU-UCACUUUAAAUGAGUGGCAAAAGUCCCUGGCCAAGAGAAUCGGAAAACCUUUUCAAGUUCAUGGCUAGAAGCGUCGAAUAACGAAACACAAACGACGCCCAAAGGCAGCAAUUU .....-.(((((.....)))))((....(((.(((((((...((((..((((....))))..)))).)))))))..(..(((.....)))..)......)))(((....))).))..... ( -30.40) >DroSim_CAF1 16304 119 - 1 AAUUU-UCACUUUAAAUGAGUGGCAAAAGUCCCUGGCCAAGAGAAUCGGAAAACCUUUUCAAGUUCAUGGCUAGAAGCGUCGAAUAACGAAACACAAACGACGCCCAAAGGCUGCAAUUU .....-.(((((.....)))))(((...(((.(((((((...((((..((((....))))..)))).)))))))..((((((................)))))).....))))))..... ( -31.09) >DroEre_CAF1 32609 96 - 1 AAUUU-UCACUUUAAGAGAGUGGCA--------------AGGGAAUCGGAAAACCUUUUCAAGUUCAUGGCUAGAAGCGUCGAACAGCGGAAUACAAACGACGCCC---------AAUUU .....-((((((.....))))))..--------------.(((..(((((((....))))..((((...((.....))...)))).............)))..)))---------..... ( -19.90) >DroYak_CAF1 3508 119 - 1 AAUUUCUCUUUUUAAAGGAGUGGCAAAA-UAGCUGGCCAAGAGAAUUGGAAAACCUUUUCAAGUUCAUGGCUAGAAGCGUCGAAUAACGAAAUACAAACGACGCCCAAAGCCAGCAAUUU .....(((((.....)))))((((....-...(((((((.(((..((((((.....)))))).))).)))))))..((((((................)))))).....))))....... ( -32.49) >consensus AAUUU_UCACUUUAAAUGAGUGGCAAAAGUCCCUGGCCAAGAGAAUCGGAAAACCUUUUCAAGUUCAUGGCUAGAAGCGUCGAAUAACGAAACACAAACGACGCCCAAAGGCAGCAAUUU ......((((((.....)))))).........(((((((...((((..((((....))))..)))).)))))))..((((((................))))))................ (-21.33 = -22.77 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:41 2006