| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,054,819 – 21,054,936 |
| Length | 117 |
| Max. P | 0.710170 |
| Location | 21,054,819 – 21,054,936 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.98 |
| Mean single sequence MFE | -26.64 |
| Consensus MFE | -22.96 |
| Energy contribution | -23.40 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21054819 117 - 23771897 ---UUUACAUAGAUACAACCUUGUCUGUCUGGCUUUUCGCCUUGGCUCUAAAAUUUUUUGGCUCUGCAAACGUGGCUGAAUGACUUAAUGUCCUUUUUGGCCGCCACACCCCAAAAAUCU ---.......(((((......)))))(((.(((.....)))..)))........(((((((...((.....(((((..((.(((.....)))...))..)))))..))..)))))))... ( -26.60) >DroSec_CAF1 109821 116 - 1 ---UUUACAUAGAUACAGCCUUGUCUGUCUGGCUUUUCGCCUUGGCUCUAA-AUUUUUUGGCCCUGCAAACGUGGCUGAAUAACUUAAUGUCCUUUUUGGCAGCCACACCCCAAAAAUCU ---.....(((((((......))))))).(((((....(((..(((..(((-.((.((..(((.((....)).)))..)).)).)))..).)).....)))))))).............. ( -24.00) >DroSim_CAF1 16084 116 - 1 ---UUUACAUAGAUACAGCCUUGUCUGUCUGGCUUUUCGCCUUGGCUCUAA-AUUUUUUGGCCCUGCAAACGUGGCUGAAUGACUUAAUGUCCUUUUUGGCAGCCACACCCCAAAAAUCU ---.....(((((((......)))))))..(((.....))).(((((((((-(...((..(((.((....)).)))..)).(((.....)))...))))).))))).............. ( -27.00) >DroEre_CAF1 32384 118 - 1 ACGCAUACAUAGAUACAGCCUUGUCUGUCUGGCUUUUCGCCUUGGCUCUAA-AAUUUUUGGCCCUGCAAACGUGGCUGAAUGACUUAAUGUCCUUUUUGGCAGCCACACCCCAAA-AUCU ........(((((((......)))))))..(((.....))).(((((((((-((..((..(((.((....)).)))..)).(((.....)))..)))))).))))).........-.... ( -27.90) >DroYak_CAF1 3283 116 - 1 ---UAUACAUAGAAACAGCCUUGUCUGUCUGGCUUUUCGCCUUGGCUCUAA-AAUUUUUGGCCCUGCAAACGUGGCUGAAUGACUUAAUGUCCUUUUUGGCAGCCACACCCCAAAUAUCU ---........((((.((((..........))))))))....(((((((((-((..((..(((.((....)).)))..)).(((.....)))..)))))).))))).............. ( -27.70) >consensus ___UUUACAUAGAUACAGCCUUGUCUGUCUGGCUUUUCGCCUUGGCUCUAA_AUUUUUUGGCCCUGCAAACGUGGCUGAAUGACUUAAUGUCCUUUUUGGCAGCCACACCCCAAAAAUCU ........(((((((......))))))).(((......((...((((..((....))..))))..))....(((((((...(((.....)))........)))))))...)))....... (-22.96 = -23.40 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:40 2006