| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,053,261 – 21,053,367 |
| Length | 106 |
| Max. P | 0.833308 |
| Location | 21,053,261 – 21,053,367 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.50 |
| Mean single sequence MFE | -25.32 |
| Consensus MFE | -18.78 |
| Energy contribution | -18.62 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.833308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21053261 106 + 23771897 AA--------------ACACAAAACAGCAUGCCGGGCAAAAGCGCAGCGUGUUGCACUCUCAUACUUACUACGUGUAUACCGUUAUGGCCAAGGCCCCAAACAAACCGCAAAUUCAUGAG ..--------------........((((((((.(.((....)).).))))))))....(((((...(((.....)))....(((..(((....)))...))).............))))) ( -25.00) >DroSec_CAF1 108318 105 + 1 AA--------------AUACAAAACAGCAUGCUGGGCAAAAGCGCAGCGUGUUGCACUCUCAUACUUACUACGUGUAUACCGUUAUGGCCAAGGCC-CAAACAAACCGCAAAUUCAUGAG ..--------------........((((((((((.((....)).))))))))))....(((((...(((.....)))....(((..(((....)))-..))).............))))) ( -29.90) >DroSim_CAF1 14559 106 + 1 AA--------------AUACAAAACAGCAUGCCGGGCAAAAGCGCAGCGUGUUGCACUCUCAUACUUACUACGUGUAUACCGUUAUGGCCAAGGCCCCAAACAAACCGCAAAUUCAUGAG ..--------------........((((((((.(.((....)).).))))))))....(((((...(((.....)))....(((..(((....)))...))).............))))) ( -25.00) >DroEre_CAF1 30814 109 + 1 AAAUAUACGAGUGCAUAUACAAAACAGCAUGCCAGGCAAAAUCGCAGCGUGUUGCACUCUCAAACUUGC-----------AGUUAUGGCCAAGGCCCCGAACAAGCCGCAAAAUCAUGAG ........(((((((...........((((((...((......)).)))))))))))))......((((-----------.(((..(((....)))...))).....))))......... ( -26.50) >DroYak_CAF1 1863 96 + 1 -------------CAUAUACAAAACAGCAUGCCAGGCAAAAUCGCAGCAUGUUGCACUCUCAAACUUAC-----------UGUUAUGGCCAAGGCCCCAAACAAACCGCAAAAUCAUGAG -------------...........((((((((...((......)).))))))))....(((((((....-----------.)))..(((....)))....................)))) ( -20.20) >consensus AA______________AUACAAAACAGCAUGCCGGGCAAAAGCGCAGCGUGUUGCACUCUCAUACUUACUACGUGUAUACCGUUAUGGCCAAGGCCCCAAACAAACCGCAAAUUCAUGAG ........................((((((((...((......)).))))))))...........................(((..(((....)))...))).................. (-18.78 = -18.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:36 2006