Locus 791

Sequence ID 3L_DroMel_CAF1
Location 2,361,118 – 2,361,218
Length 100
Max. P 0.813928
window1216

overview

Window 6

Location 2,361,118 – 2,361,218
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 92.50
Mean single sequence MFE -32.12
Consensus MFE -23.62
Energy contribution -23.82
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.42
Structure conservation index 0.74
SVM decision value 0.66
SVM RNA-class probability 0.813928
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2361118 100 - 23771897
UAUUGUUAAACGAAAGCUAAGAUUUGGCAUUUGUUUGGCGCCGUUGCCAGAUUGAUUGUGGUUAGUCAUAUGGUGAGUCUGGUGCCAGACUGCGAAAGCA
...............((((.....))))....((((((((((((..(((...((((((....))))))..)))..)...))))))))))).((....)). ( -36.70)
>DroSec_CAF1 110025 100 - 1
UAUUGUUAAACGAAAGCUAAAAUUUGGCAUUUGUUUGGCGCCGUUGCCAGAUCGAUUGUGGUUAGUCAUAUGGUGAGCCUGCUGCCAGACUGCGAGAGCA
....((((((((((.((((.....)))).))))))))))((..((((.((.(((((((....)))))...((((.((....))))))))))))))..)). ( -29.70)
>DroSim_CAF1 111029 100 - 1
UAUUGUUAAACGAAAGCUAAAAUUUGGCUUUUGUUUGGCGCCGUUGCCAGAUCGAUUGUGGUUAGUCAUAUGGUGAGCCUGCUGCCAGACUGCGAGAGCA
....(((((((((((((((.....)))))))))))))))((..((((.((.(((((((....)))))...((((.((....))))))))))))))..)). ( -33.80)
>DroEre_CAF1 117074 96 - 1
UAUUGUUAAACGAAAGCUAAAAUUUGGCAUUUGUUUGGCGCCGUUGCCAGAUCGAUUGUGAUUAGUCAUAUGGUGAGGUGGCUGCCAGACUGCUUA----
....((((((((((.((((.....)))).))))))))))((.(((((((..(((..(((((....)))))...)))..)))).....))).))...---- ( -28.70)
>DroYak_CAF1 114164 100 - 1
UAUUGUUAAACGAAAGCUAAAAUUUGGCAUUUGUUUGGCGCCGUUGCCAGAUAGAUUGUGGUUAGUCAUAUGGUGAGGUGGCUGCCAGACUGCGUAAGCA
...............((((.....))))....((((((((((((..(((.((.(((((....))))))).)))..)..)))).))))))).((....)). ( -31.70)
>consensus
UAUUGUUAAACGAAAGCUAAAAUUUGGCAUUUGUUUGGCGCCGUUGCCAGAUCGAUUGUGGUUAGUCAUAUGGUGAGCCUGCUGCCAGACUGCGAAAGCA
....((((((((((.((((.....)))).))))))))))((.(((........(((((....)))))...((((.((....))))))))).))....... (-23.62 = -23.82 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:16 2006