Locus 7909

Sequence ID 3L_DroMel_CAF1
Location 21,050,714 – 21,050,834
Length 120
Max. P 0.875011
window12887

overview

Window 7

Location 21,050,714 – 21,050,834
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.22
Mean single sequence MFE -32.30
Consensus MFE -27.77
Energy contribution -27.15
Covariance contribution -0.62
Combinations/Pair 1.10
Mean z-score -1.97
Structure conservation index 0.86
SVM decision value 0.89
SVM RNA-class probability 0.875011
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21050714 120 + 23771897
CCUAGCCGAGAUUAAUGUGCAGAGUGUAAAGUUCAUGCCUUCAGAGCAAAGUUCACAUGGGCAAGGUACCUGCACUAUAUUGCUGUGUAUGUACAUACAUAUAUGCUUUUGGUAAAGUAA
....(((((((.....((((((.(((......((.(((((...((((...))))....))))).)))))))))))......((.((((((((....)))))))))))))))))....... ( -32.90)
>DroSec_CAF1 105861 116 + 1
CCUAGCCGAGAUUAAUGUGCAGAGUGUAAAGUUCAUGCCUUCAGAGCAAAGUUCACUUGGGCAAGGUACCUGCACUAUAUUACUAUGUAUGUAC----AUAUACGGUCUUGGUAAAGUAA
....(((((((((.(((((((.((((((....((.(((((...((((...))))....))))).))....))))))((((....)))).)))))----))....)))))))))....... ( -32.70)
>DroSim_CAF1 12075 116 + 1
CCUAGCCGAGAUUAAUGUGCAGAGUGUAAAGUUCAUGCCUUCAGAGCAAAGUUCACUUGGGCAAGGUACCUGCACUAUAUUACUAUGUAUGUAC----AUAUACGCUCUUGGUAAAGUAA
....(((((((...(((((((.((((((....((.(((((...((((...))))....))))).))....))))))((((....)))).)))))----))......)))))))....... ( -30.20)
>DroEre_CAF1 28163 116 + 1
CCUAGCCGAGAUUAAUGCGCAGAGUGUAAAGUUCAUGCCUUCAGAGCAAAGUUCACUUGGGCAAGGUACGUGCACUAUAUAUCUAUGUAUGUGC----AUAUAUACUCUUGGUAAAGUAA
....(((((((.((((((((..((((((....((.(((((...((((...))))....))))).))....))))))(((((....)))))))))----))...)).)))))))....... ( -33.40)
>consensus
CCUAGCCGAGAUUAAUGUGCAGAGUGUAAAGUUCAUGCCUUCAGAGCAAAGUUCACUUGGGCAAGGUACCUGCACUAUAUUACUAUGUAUGUAC____AUAUACGCUCUUGGUAAAGUAA
....(((((((...........((((((....((.(((((...((((...))))....))))).))....)))))).........(((((((......))))))).)))))))....... (-27.77 = -27.15 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:24 2006