Locus 7908

Sequence ID 3L_DroMel_CAF1
Location 21,050,048 – 21,050,168
Length 120
Max. P 0.715752
window12886

overview

Window 6

Location 21,050,048 – 21,050,168
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.28
Mean single sequence MFE -21.77
Consensus MFE -20.40
Energy contribution -20.65
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.94
SVM decision value 0.39
SVM RNA-class probability 0.715752
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21050048 120 + 23771897
CUUAUCAAUCAUCAUAACCGAAAGCGGAAACACUUCCCUGAAUUCAUUAGAAUAAUUGUGAAAAGGUAAUUACCAGCAAGGCUGAUUACCUCUAAUUGCCUAAUGCACCCAAAUUGGCCA
...........((((((.....((.((((....))))))..((((....))))..))))))..(((((((((((.....)).)))))))))......(((.(((........)))))).. ( -22.80)
>DroSec_CAF1 105196 120 + 1
CUUAUCAAUCAUCAUAACCGAAAGCGGAAACACCUACCUGAAUUCAUUAGAAUAAUUGUGAAAAGGUAAUUACCAGCAAGGCUGAUUACCUCUAAUUGCCUAAUACACCCUAAUUGGCCA
...........(((((((((....)))..............((((....))))..))))))..(((((((((((.....)).)))))))))......(((.(((........)))))).. ( -21.30)
>DroSim_CAF1 11426 120 + 1
CUUAUCAAUCAUCAUAACCGAGAGCGGAAACACUUCCCUGAAUUCAUUAGAAUAAUUGUGAAAAGGUAAUUACCAGCAAGGCUGAUUACCUCUAAUUGCCUAAUACACCCUAAUUGGCCA
...........((((((..(..((.(....).))..)....((((....))))..))))))..(((((((((((.....)).)))))))))......(((.(((........)))))).. ( -22.70)
>DroEre_CAF1 27497 119 + 1
CCUUUCAAUCAUCAUAACCAAAAGCGGAAACACC-CCCUGAAUUCAUUAGAAUAAUUGUGAAAAGGUAAUUACCAGCAAGGCUGAUUACCUCUAAUAGCCUAAUACACCUUAAUUGGCCA
...........((((((........(....)...-......((((....))))..))))))..(((((((((((.....)).)))))))))......(((.(((........)))))).. ( -20.30)
>consensus
CUUAUCAAUCAUCAUAACCGAAAGCGGAAACACCUCCCUGAAUUCAUUAGAAUAAUUGUGAAAAGGUAAUUACCAGCAAGGCUGAUUACCUCUAAUUGCCUAAUACACCCUAAUUGGCCA
...........(((((((((....)))..............((((....))))..))))))..(((((((((((.....)).)))))))))......(((.(((........)))))).. (-20.40 = -20.65 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:23 2006