Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,048,596 – 21,048,715 |
Length | 119 |
Max. P | 0.747070 |
Location | 21,048,596 – 21,048,715 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.38 |
Mean single sequence MFE | -16.69 |
Consensus MFE | -13.95 |
Energy contribution | -13.70 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -1.66 |
Structure conservation index | 0.84 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21048596 119 - 23771897 CCACU-ACCAAUGAGCCGAGACCCCAAAGCCCAAACCAAAACAAAACCCAAGCCCAAAACUACCUGGUCAACAGCAGGCAACUUACAACUACUUGGGCGCAACUUUCACUAAUUUUCAAU .....-...........((((.......((((((.................(.(((........))).)......((....)).........)))))).....))))............. ( -14.90) >DroSec_CAF1 103766 115 - 1 CCACU-ACCAAAGAGCCGAGAC-CCAAAGCCCAAGCGAAAACAAAACCCAAGCCCAAAACAACCUGGUCAACAGCGGGCAACUUACAA---CUUGGGCGCAACUUUCACUAAUUUUCAAU .....-...........((((.-.....(((((((.(....).........((((........(((.....))).)))).........---))))))).....))))............. ( -20.00) >DroSim_CAF1 10017 101 - 1 CCACU-AC---------------CCAAAGACCAAGCCAAAACAAAACCCAAGCCCAAAACAACCUGGUCAACAGCGGGCAACUUACAA---CUUGGGCGCAACUUUCACUAAUUUUCAAU .....-..---------------............................((((((......(((.....))).((....)).....---.))))))...................... ( -13.70) >DroEre_CAF1 25750 116 - 1 CCACAGACCCAAGACCCAAGAC-CCAAAACCCAAGCCGAAACAAAAUCCAAGCCCAAAACAACCUGGUCAACAGCAGGCAACUUGCAA---CUUGGGCGCAACUUUCACUAAUUUUCAAU .....(.((((((......(((-(..........((.((.......))...))............))))....((((....).)))..---)))))))...................... ( -18.15) >consensus CCACU_ACCAAAGAGCCGAGAC_CCAAAGCCCAAGCCAAAACAAAACCCAAGCCCAAAACAACCUGGUCAACAGCAGGCAACUUACAA___CUUGGGCGCAACUUUCACUAAUUUUCAAU ...................................................((((((......(((.....))).((....)).........))))))...................... (-13.95 = -13.70 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:20 2006