Locus 7904

Sequence ID 3L_DroMel_CAF1
Location 21,047,716 – 21,047,828
Length 112
Max. P 0.758851
window12880

overview

Window 0

Location 21,047,716 – 21,047,828
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.20
Mean single sequence MFE -34.80
Consensus MFE -21.08
Energy contribution -22.02
Covariance contribution 0.94
Combinations/Pair 1.12
Mean z-score -2.30
Structure conservation index 0.61
SVM decision value 0.50
SVM RNA-class probability 0.758851
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21047716 112 - 23771897
GAAAGGGGGCAGCGGGG--GAAGUGUCGGCUGCUGUGCUAUAAUUAUAUUAUAAAAUG------GGUCCAUAUAAUAGACUUGUUUUUUGCCCCCGGCUAAUUUGCAAUGUUGGCCAAAU
....((((((((((.((--..(((....))).)).)))).............((((..------((((.........))))..))))..))))))(((((((.......))))))).... ( -38.50)
>DroSec_CAF1 102962 112 - 1
GAAAGGGGGCAGCGGGGGGGAAGUGUCGGCUGCUGUGCUAUAAUUAUAUUAUAAAAUG------GGCCCA--UAAUAGACUUGUUUUUCGCCCCCGGCUAAUUUGCAAUGUUGGCCAAAU
....((((((((((.((.((.........)).)).)))).............((((..------(((...--.....).))..))))..))))))(((((((.......))))))).... ( -34.90)
>DroSim_CAF1 9213 110 - 1
GAAAGGGGGCAGAGGGG--GGAGUGUCGGCUGCUGUGCUAUAAUUUUAUUAUAAAAUG------GGCCCA--UAAUAGACUUGUUUUUCGCCCCCGGCUAAUUUGCAAUGUUGGCCAAAU
....((((((.((((((--.((((((.(((..((((..((((((...))))))..)))------)))).)--).....)))).))))))))))))(((((((.......))))))).... ( -36.90)
>DroEre_CAF1 24992 97 - 1
GAAA-------------------UGUCGGCUGCUGUGCCAUAAUUAUAUUAUAAAAUGGGCAUGGGCCCA--U-CUAGACUUGUU-UUCGCCCCUGGCUAAUUUGCAAUGUUGGCCAAAU
((((-------------------.((((((......)))................((((((....)))))--)-...)))....)-))).....((((((((.......))))))))... ( -28.90)
>consensus
GAAAGGGGGCAGCGGGG__GAAGUGUCGGCUGCUGUGCUAUAAUUAUAUUAUAAAAUG______GGCCCA__UAAUAGACUUGUUUUUCGCCCCCGGCUAAUUUGCAAUGUUGGCCAAAU
....((((((..............(((......((.(((.......((((....))))......))).)).......)))..(.....)))))))(((((((.......))))))).... (-21.08 = -22.02 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:17 2006