| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,046,968 – 21,047,109 |
| Length | 141 |
| Max. P | 0.669005 |
| Location | 21,046,968 – 21,047,069 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.65 |
| Mean single sequence MFE | -23.45 |
| Consensus MFE | -17.39 |
| Energy contribution | -17.20 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21046968 101 + 23771897 ACACACUAUGCGCCGAUCAAGUGCAUAUAAUUAUGCAGCAUACCCUAUAA------AGUAGGGUAAGGUAUAGCGAAUCUUCUAAGCA-------------CUCUGCUCUUUGUACACAU ((((.((((((..........((((((....))))))...((((((((..------.))))))))..)))))).).........(((.-------------....)))...)))...... ( -24.10) >DroSec_CAF1 102216 97 + 1 ACACACUCUGCGCCGAUCAAGUGCAUAUAAUUAUGCAGCAUACCCUAUAA------AGUAGGGCAAGGUAUAGCGAAUAUUCUGAGCA-------------CUCUGCUAU----AUGCAU .....................((((((....))))))(((((((((((..------.))))))((..((((.....))))..))(((.-------------....))).)----)))).. ( -21.80) >DroSim_CAF1 8474 84 + 1 ACACUCUCUGCGCCGAUCAAGUGCAUAUAAUUAUGCAGCAUACCCUAUAA------AGUAGGGCAAGGUAUAGCGAAUAUUCUGAGCA-------------CU----------------- ....((.(((..((.......((((((....)))))).....((((((..------.))))))...))..))).))............-------------..----------------- ( -19.90) >DroEre_CAF1 24243 115 + 1 ACACGCUCUCCGCCGAUCAAGUGCAUAUGAUUAUGCACCAUACCCUAUAUACUCGCAGUAGGGCAAGGUAUAGUGUAUC--CCGCGGUCUAUAUGAUGUCGUUCUGUUUUUAGUC---CG ..(((((....(((......(((((((....)))))))....((((((.........))))))...)))..)))))...--...(((.(((...(((........)))..))).)---)) ( -28.00) >consensus ACACACUCUGCGCCGAUCAAGUGCAUAUAAUUAUGCAGCAUACCCUAUAA______AGUAGGGCAAGGUAUAGCGAAUAUUCUGAGCA_____________CUCUGCU_U____A___AU ..........(((..(((...((((((....)))))).....((((((.........))))))...)))...)))............................................. (-17.39 = -17.20 + -0.19)
| Location | 21,047,008 – 21,047,109 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.60 |
| Mean single sequence MFE | -20.94 |
| Consensus MFE | -14.88 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21047008 101 + 23771897 UACCCUAUAAAGUAGGGUAAGGUAUAGCGAAUCUUCUAAGCACUCUGCUCUUUGUACACAUUUUUAUCCUGCAGGAUACAUAGGCUGCCUUUUAAAAUUCU ((((((((...))))))))((((..(((..........(((.....)))...............(((((....))))).....)))))))........... ( -21.60) >DroSec_CAF1 102256 97 + 1 UACCCUAUAAAGUAGGGCAAGGUAUAGCGAAUAUUCUGAGCACUCUGCUAU----AUGCAUUUUUUUCCUGCAGGAUACAUAGGAUGCCUUAUAUAAUCCU ..((((((...)))))).(((((((......(((((((((.....(((...----..)))........)).)))))))......))))))).......... ( -21.52) >DroSim_CAF1 8514 81 + 1 UACCCUAUAAAGUAGGGCAAGGUAUAGCGAAUAUUCUGAGCACU--------------------UGACCUGCAGGAUACAUAGGAUGCCUUAUAUAAUCAU ..((((((...)))))).(((((((......(((((((((....--------------------....)).)))))))......))))))).......... ( -19.70) >consensus UACCCUAUAAAGUAGGGCAAGGUAUAGCGAAUAUUCUGAGCACUCUGCU_U____A__CAUUUUUAUCCUGCAGGAUACAUAGGAUGCCUUAUAUAAUCCU ..((((((...)))))).(((((((.((...........)).......................(((((....)))))......))))))).......... (-14.88 = -15.77 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:00:10 2006