Locus 790

Sequence ID 3L_DroMel_CAF1
Location 2,357,290 – 2,357,380
Length 90
Max. P 0.808923
window1215

overview

Window 5

Location 2,357,290 – 2,357,380
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 76.90
Mean single sequence MFE -22.75
Consensus MFE -12.21
Energy contribution -12.46
Covariance contribution 0.25
Combinations/Pair 1.37
Mean z-score -1.94
Structure conservation index 0.54
SVM decision value 0.64
SVM RNA-class probability 0.808923
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2357290 90 + 23771897
UCGGUCCGGCUGAAAUCUCUGGUAAAGGCCGUU-------UAAAAUGGCAAAAAUAAAGAAAAAGGAGGCGAAAGCUAAACCUUUGACUCGCAAGGA
((((.....))))..((..((......(((((.-------....))))).........((.(((((.(((....)))...)))))...)).))..)) ( -20.90)
>DroPse_CAF1 136663 94 + 1
GUGAUUCUGAGGGAGUCCCAU---CAGGCCAUCAUCUCCAUAAAAUGGUUAAAAUCAGGAAAAAGGAGCCCAUGAAGAAGCGUCUCACCCGCAAGGA
((((..(((((((...))).)---)))((..((((((((......((((....)))).......))))...))))....))...))))((....)). ( -22.52)
>DroSec_CAF1 106197 90 + 1
UCGGUCCAGCUGAAAUCUCUGGUAAAGGCCGUU-------GAAAAUGGCAAAAAUAAAGAAAAAGGAGCCGAAAGCUAAACCUUUGACCCGCAAGGA
..(((..((((.....((((.......(((((.-------....)))))...............)))).....))))..)))......((....)). ( -20.45)
>DroSim_CAF1 107201 90 + 1
UCGGUUCAGCUGAAAUCUCUGGUAAAUGCCAUU-------GAAAAUGGCAAAAAUAAAGAAAAAGGAGGCGAAAGCUAAACCUUUGACCCGCAAGGA
((((.....))))....(((......((((((.-------....)))))).......))).(((((.(((....)))...)))))...((....)). ( -24.52)
>DroEre_CAF1 113167 89 + 1
GCGGUCUGGUUGAAAUCUCUUGUAUAUGCCGUC--------AAAAUGGCAAAAAUAAGGAAGAAGGAGGCCAAAGCUAAGCCUUUAACCCGCAAGGA
((((...........((.(((((.(.((((((.--------...)))))).).))))))).(((((.(((....)))...)))))...))))..... ( -24.50)
>DroYak_CAF1 110264 90 + 1
GCGCCCGGCCUGAAAUCUCCUGUAUAUGCCGUC-------CAAAAUGGCAAAAAUAAAGAAGAAGGAGGCCAAAGCUAAACCAUUAACCCGCAAGGA
((....(((((....(((.((.(((.((((((.-------....))))))...))).)).)))...)))))...))............((....)). ( -23.60)
>consensus
GCGGUCCGGCUGAAAUCUCUGGUAAAGGCCGUC_______GAAAAUGGCAAAAAUAAAGAAAAAGGAGGCCAAAGCUAAACCUUUGACCCGCAAGGA
...............(((........((((((............)))))).......))).(((((.(((....)))...)))))...((....)). (-12.21 = -12.46 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:15 2006