Locus 79

Sequence ID 3L_DroMel_CAF1
Location 295,227 – 295,321
Length 94
Max. P 0.590793
window112

overview

Window 2

Location 295,227 – 295,321
Length 94
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 87.09
Mean single sequence MFE -39.24
Consensus MFE -28.71
Energy contribution -29.47
Covariance contribution 0.76
Combinations/Pair 1.03
Mean z-score -1.67
Structure conservation index 0.73
SVM decision value 0.11
SVM RNA-class probability 0.590793
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 295227 94 + 23771897
CUGGUCGCUGCUUAAGCUCGCGGGCUUGAGCCAAAGCUCGUGGCCAUUCUGAGUA--------------CGGAGAGCCG---AAACGAUGACGUCGUCGAAAGCU-CCAGAU
((((..(((((((..((.(((((((((......)))))))))))...((((....--------------))))))))..---...(((((....)))))..))).-)))).. ( -35.60)
>DroSec_CAF1 5009 94 + 1
CUGGUCGCUGCUUAAGCUCGCGGGCUUGAGCCAAAGCUCGUGGCCAUUCUGAGUA--------------CGGAGAGCCG---AAACGAUGACGUCGUCGAAAGCU-CCAGAU
((((..(((((((..((.(((((((((......)))))))))))...((((....--------------))))))))..---...(((((....)))))..))).-)))).. ( -35.60)
>DroSim_CAF1 7304 94 + 1
CUGGUCGCUGCUUAAGCUCGCGGGCUUGAGCCAAAGCUCGUGGCCAUUCUGAGUA--------------CGGAGAGCCG---AAACGAUGACGUCGUCGAAAGCU-CCAGAU
((((..(((((((..((.(((((((((......)))))))))))...((((....--------------))))))))..---...(((((....)))))..))).-)))).. ( -35.60)
>DroEre_CAF1 5014 109 + 1
CUGGUGGCUGCUUAAGCUCGCGGGCUUGAGCUAAAGCUCCCGGCCACUCGGAGCACGGAGCUCGGAGCACGGAGAGCCG---GAACGAUGACGUCGCCGAAAGCUUGCAGAU
(((..(((((((((((((....)))))))))....(((((((....(((.((((.....)))).)))..))).))))((---(.(((....)))..)))..))))..))).. ( -46.80)
>DroYak_CAF1 6064 98 + 1
CUGGUCGCUGCUGAAGCUCGCGGGCUUGAGCCAAAGCUCCUGGCCACUCGGCGUA--------------CGGAGAGCCGCAGCAACGAUGACGUCGUCGAAAGCUUCCAGAU
((((..(((((((..((((((.(((....)))...))((((((((....))).))--------------.)))))))..))))..(((((....)))))..)))..)))).. ( -42.60)
>consensus
CUGGUCGCUGCUUAAGCUCGCGGGCUUGAGCCAAAGCUCGUGGCCAUUCUGAGUA______________CGGAGAGCCG___AAACGAUGACGUCGUCGAAAGCU_CCAGAU
((((.....(((((((((....)))))))))...((((...(((..(((((..................))))).))).......(((((....)))))..)))).)))).. (-28.71 = -29.47 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:47 2006