Locus 7898

Sequence ID 3L_DroMel_CAF1
Location 21,043,807 – 21,043,919
Length 112
Max. P 0.500000
window12860

overview

Window 0

Location 21,043,807 – 21,043,919
Length 112
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.31
Mean single sequence MFE -33.72
Consensus MFE -25.15
Energy contribution -28.15
Covariance contribution 3.00
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.75
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21043807 112 + 23771897
GAACGAAACGUGCCAACGUCUAAAGAUUGCCGAUAAGCCCAAAAAGAGGGAGUUAUAGACACUUUGGA--------UGUUUCGGUGGAUAAGUCGGAGGUGGAGGGUAACACCACUCUGC
...((((((((.((((.(((((..((((.((................)).)))).)))))...)))))--------)))))))..........(((((.(((.(.....).)))))))). ( -30.49)
>DroSec_CAF1 99076 120 + 1
GAACGAAACGUGCCAACGUCUAAAGAUCGCCGAUAAGCCCAAAAAGAGGGAGUUAUAGACACUUUGGAUGUUUGGAUGUUUCGGGGGAUAAGUGAGAGGGGGAGGGUAACACCACUGCGC
...((((((((.(((((((((((((.((....((((.(((.......)))..)))).))..))))))))).))))))))))))...............(.((.((......)).)).).. ( -35.20)
>DroSim_CAF1 5345 120 + 1
GAACGAAACGUGCCAACGUCUAAAGAUCGCCGAUAAGCCCAAAAAGAGGGAGUUAUAGACACUUUGGAUGUUUGGAUGUUUCGGGGGAUAAGUGAGAGGGGGAGGGUAACACCACUCUGC
...((((((((.(((((((((((((.((....((((.(((.......)))..)))).))..))))))))).))))))))))))...............(.((((((.....)).)))).) ( -37.20)
>DroEre_CAF1 21235 110 + 1
GAACGAAACGUGCCAACGUCUAAAGAUCGCCGAUAAGCCCAAAAAGAGGGAGUUAUAGACACUUUGGA--------UGUUUCGGGGGAUAAGUCGGAGGAG--GGGUAACUCCACUCUGA
...((((((((.((((.(((((...(((...)))...(((.......))).....)))))...)))))--------))))))).........((((((..(--((....)))..)))))) ( -32.00)
>consensus
GAACGAAACGUGCCAACGUCUAAAGAUCGCCGAUAAGCCCAAAAAGAGGGAGUUAUAGACACUUUGGA________UGUUUCGGGGGAUAAGUCAGAGGGGGAGGGUAACACCACUCUGC
...((((((((.(.(((((((((((.((....((((.(((.......)))..)))).))..))))))))))).).))))))))..............((((...((.....)).)))).. (-25.15 = -28.15 +   3.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:54 2006