Locus 7897

Sequence ID 3L_DroMel_CAF1
Location 21,043,613 – 21,043,733
Length 120
Max. P 0.569916
window12859

overview

Window 9

Location 21,043,613 – 21,043,733
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.92
Mean single sequence MFE -35.45
Consensus MFE -33.31
Energy contribution -33.88
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.66
Structure conservation index 0.94
SVM decision value 0.07
SVM RNA-class probability 0.569916
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21043613 120 - 23771897
UUUUAUUGUGGCUCGUAUUAGAUUGCCAUGGCCAAUGCAUAAAUCUGUUAUUGAAUGCGAGCCCGAAUUGGAAUCGGAAUCCGAUCGAGAGCGAUUCCAAGAAAGCCAGUGUAAGGCCAA
.....(((.((((((((((.....((....))(((((((......)).)))))))))))))))))).(((((((((...((.....))...)))))))))....(((.......)))... ( -37.10)
>DroSec_CAF1 98879 120 - 1
UUUUAUUGUGGCUCGUAUUAGAUUGCCAUGGCCAAUGCAUAAAUCUGUUAUUCAAUGCGAGCCCGAAUUGGAAUCGGAAUCCGAUCGAGAGCGAUUCCAAGAAAGCCAGUGUAAGGCCAA
.....(((.(((((((((((((((..(((.....)))....)))))).......)))))))))))).(((((((((...((.....))...)))))))))....(((.......)))... ( -34.81)
>DroSim_CAF1 5148 120 - 1
UUUUAUUGUGGCUCGUAUUAGAUUGCCAUGGCCAAUGCAUAAAUCUGUUAUUGAAUGCGAGCCCGAAUUGGAAUCGGAAUCCGAUCGAGAGCGAUUCCAAGAAAGCCAGUGUAAGGCCAA
.....(((.((((((((((.....((....))(((((((......)).)))))))))))))))))).(((((((((...((.....))...)))))))))....(((.......)))... ( -37.10)
>DroEre_CAF1 21035 120 - 1
UUUUAUUGUGGCUCGUAUUAGAUUGCCAUGGCCAAUGCAUAAAUCUGUUAUUGAAUGCGAGCCCGAAUUGGCAUCGGAAUCCGAUCGAGAGCGUUUCCAAGAAAGCCAGUGUGAGGUCAA
.....(((.((((((((((.....((....))(((((((......)).))))))))))))))))))(((((((((((...))))).((((...)))).......)))))).......... ( -32.80)
>consensus
UUUUAUUGUGGCUCGUAUUAGAUUGCCAUGGCCAAUGCAUAAAUCUGUUAUUGAAUGCGAGCCCGAAUUGGAAUCGGAAUCCGAUCGAGAGCGAUUCCAAGAAAGCCAGUGUAAGGCCAA
.....(((.((((((((((.....((....))(((((((......)).)))))))))))))))))).(((((((((...((.....))...)))))))))....(((.......)))... (-33.31 = -33.88 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:53 2006