Locus 7895

Sequence ID 3L_DroMel_CAF1
Location 21,042,280 – 21,042,400
Length 120
Max. P 0.765040
window12855

overview

Window 5

Location 21,042,280 – 21,042,400
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.25
Mean single sequence MFE -30.90
Consensus MFE -24.06
Energy contribution -23.88
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -1.81
Structure conservation index 0.78
SVM decision value 0.51
SVM RNA-class probability 0.765040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21042280 120 + 23771897
AAUGUAAGUCAUACAACAAAUUUCGUUGCUGGGCUACUUGGAAAACACAAUUUCGUGUGUCUUGGCAGCUGGCCGAAGAACACUCUUCAAAAAUAUGGUUUGUUAUUUGGCAACAUGUCC
.((((..((((...((((((((..(((((..((.(((.(((((.......))))).))).))..))))).....(((((....)))))........))))))))...)))).)))).... ( -31.10)
>DroSec_CAF1 97546 109 + 1
AAUGUAAGUCAUAUAACAAAUUUCGUUGCUGGGCUACUUGGAAAACAGAAUUUCGUGUGUCUUGGCAGCUG-CCGAAGGGCACUCUUCAAAAAUA----------UUUGACAAUAUGUCC
.......((((.(((.........(((((..((.(((.(((((.......))))).))).))..)))))((-((....))))...........))----------).))))......... ( -29.10)
>DroSim_CAF1 3788 109 + 1
AAUGUAAGUCAUAUAACAAAUUUCGUUGCUGGGCUACUUGGAAAACAGAAUUUCGUGGGUCUUGGCAGCUG-CCGAAGGGCACUCUUCAAAAAUA----------UUUGACAAUAUGUCU
.......((((.(((.........(((((..((((...(((((.......)))))..)).))..)))))((-((....))))...........))----------).))))......... ( -27.90)
>DroEre_CAF1 19585 119 + 1
AAUGUAAGUCAUAUAACAAAUUUCGUUGCUGGGCUACUUGGAAAACAGAAUUUCGUGUGUCUUGGCAGCUGGCCGAAGGGCACUCUUCAAAAAUAUGGCUUG-UAUUUGGCAACACGUUC
((((((((((((((..........(((((..((.(((.(((((.......))))).))).))..)))))..(((....)))...........))))))))))-))))((....))..... ( -35.50)
>consensus
AAUGUAAGUCAUAUAACAAAUUUCGUUGCUGGGCUACUUGGAAAACAGAAUUUCGUGUGUCUUGGCAGCUG_CCGAAGGGCACUCUUCAAAAAUA__________UUUGACAACAUGUCC
.......((((.............(((((..((.(((.(((((.......))))).))).))..))))).....(((((....)))))...................))))......... (-24.06 = -23.88 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:49 2006