Locus 7890

Sequence ID	3L_DroMel_CAF1
Location	21,037,776 – 21,037,936
Length	160
Max. P	0.976107

overview

Window 1

Location	21,037,776 – 21,037,896
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	98.89
Mean single sequence MFE	-37.83
Consensus MFE	-37.80
Energy contribution	-37.80
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-2.52
Structure conservation index	1.00
SVM decision value	1.76
SVM RNA-class probability	0.976107
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21037776 120 - 23771897
ACGUCUAUGAGAUGGCAUCCCGUGAGGAGCACAUGGGCAUGUCAUUUCUUGGCUUCGUCGAGCAUCUUUGGCAUUUCUCAAAUUUGCUUUUGUCUUUGGAUUGGUAUUUCCCCACAAUCC
..(((...((((((((((((((((.......)))))).))))))))))..)))......(((((..(((((......)))))..)))))........((((((...........)))))) ( -37.80)
>DroSec_CAF1 92958 120 - 1
ACGUCUAUGAGAUGGCAUCCCGUGAGGAGCACAUGGGCAUGUCAUUUCUUGGCUUCGUCGAGCAUCUUUGGCAUUUCUCAAAUUUGCUUUUGUCUUUGGAUUGGUAUUUCCCCACAAUCC
..(((...((((((((((((((((.......)))))).))))))))))..)))......(((((..(((((......)))))..)))))........((((((...........)))))) ( -37.80)
>DroEre_CAF1 14946 120 - 1
ACGUCUAUGAGAUGGCAUCCCGUGAGGAGCACAUGGGCAUGUCAUUUCUUGGCUGCGCCGAGCAUCUUUGGCAUUUCUCAAAUUUGCUUUUGUCUUUGGAUUGGUAUUUCCCCACAAUCC
..(((...((((((((((((((((.......)))))).))))))))))..))).(((..(((((..(((((......)))))..))))).)))....((((((...........)))))) ( -37.90)
>consensus
ACGUCUAUGAGAUGGCAUCCCGUGAGGAGCACAUGGGCAUGUCAUUUCUUGGCUUCGUCGAGCAUCUUUGGCAUUUCUCAAAUUUGCUUUUGUCUUUGGAUUGGUAUUUCCCCACAAUCC
..(((...((((((((((((((((.......)))))).))))))))))..)))......(((((..(((((......)))))..)))))........((((((...........)))))) (-37.80 = -37.80 +   0.00)

alignment

secondary structure

dotplot

Window 2

Location	21,037,816 – 21,037,936
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	98.33
Mean single sequence MFE	-41.77
Consensus MFE	-40.00
Energy contribution	-40.33
Covariance contribution	0.33
Combinations/Pair	1.00
Mean z-score	-1.81
Structure conservation index	0.96
SVM decision value	0.49
SVM RNA-class probability	0.755010
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21037816 120 - 23771897
GGCAAUCUGCAUCUUCCGUCGUGGUCUGGACCACUGUUCCACGUCUAUGAGAUGGCAUCCCGUGAGGAGCACAUGGGCAUGUCAUUUCUUGGCUUCGUCGAGCAUCUUUGGCAUUUCUCA
.((.....)).......((((((((....)))))(((((.(((.(((.((((((((((((((((.......)))))).)))))))))).)))...))).))))).....)))........ ( -42.60)
>DroSec_CAF1 92998 120 - 1
GACAAUCUGCAUCUUCCGUCGUGGUCUGGACCACUGUUCCACGUCUAUGAGAUGGCAUCCCGUGAGGAGCACAUGGGCAUGUCAUUUCUUGGCUUCGUCGAGCAUCUUUGGCAUUUCUCA
.................((((((((....)))))(((((.(((.(((.((((((((((((((((.......)))))).)))))))))).)))...))).))))).....)))........ ( -41.30)
>DroEre_CAF1 14986 120 - 1
GGCAAUCUGCAUCUUCCGUCGUGGUCUGGACCACUGUUCCACGUCUAUGAGAUGGCAUCCCGUGAGGAGCACAUGGGCAUGUCAUUUCUUGGCUGCGCCGAGCAUCUUUGGCAUUUCUCA
.((.....)).......((((((((....)))))(((((..((((((.((((((((((((((((.......)))))).)))))))))).)))..)))..))))).....)))........ ( -41.40)
>consensus
GGCAAUCUGCAUCUUCCGUCGUGGUCUGGACCACUGUUCCACGUCUAUGAGAUGGCAUCCCGUGAGGAGCACAUGGGCAUGUCAUUUCUUGGCUUCGUCGAGCAUCUUUGGCAUUUCUCA
.................((((((((....)))))(((((.(((.(((.((((((((((((((((.......)))))).)))))))))).)))...))).))))).....)))........ (-40.00 = -40.33 +   0.33)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:37 2006