Locus 7888

Sequence ID 3L_DroMel_CAF1
Location 21,036,460 – 21,036,580
Length 120
Max. P 0.530620
window12837

overview

Window 7

Location 21,036,460 – 21,036,580
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.33
Mean single sequence MFE -31.23
Consensus MFE -20.64
Energy contribution -22.17
Covariance contribution 1.53
Combinations/Pair 1.04
Mean z-score -1.49
Structure conservation index 0.66
SVM decision value -0.01
SVM RNA-class probability 0.530620
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21036460 120 - 23771897
AAUCGACGGGGGUGCAUGUCGUACGUAGGUGUGGGUGAGCGGCGGCAUAAAGCCUCAUUAGAUUGAAGAAAAGGAUUCCAAUCCAGUGAUCCAGUGAUGACGGUUCCCAGUCGUAAAAAA
...((((.(((((((.((((((((.((....)).))..))))))))))..((((((((((..((......))((((..(......)..))))..)))))).))))))).))))....... ( -33.40)
>DroSec_CAF1 91589 90 - 1
AAUCGACGGGGGUGCAUGUCGUACGUAGGUGUGGGUGAGCGGCGGCAUAAAGCCUCAUUAUAAUGAAAAAAAGGAUU------------------------------CAGUCGUAAAAAA
...((((.(((((..(((((((.(((............))))))))))...))))).......((((........))------------------------------))))))....... ( -22.70)
>DroEre_CAF1 13611 120 - 1
AAUCGACGGGGGUGUAUGUCGUUUGUAGGUGUAGGUGAGCGGCGGCAUAAAGCCUCAUUAUAAUGAAGAAAAGGAUUCCAAUCCAGCGAUCCAGUGAUGACGGUUACCCGUCGUAAAAAA
...(((((((.((((.(((((((..(........)..)))))))))))..(((((((((((..(......).(((((.(......).))))).))))))).)))).)))))))....... ( -37.60)
>consensus
AAUCGACGGGGGUGCAUGUCGUACGUAGGUGUGGGUGAGCGGCGGCAUAAAGCCUCAUUAUAAUGAAGAAAAGGAUUCCAAUCCAG_GAUCCAGUGAUGACGGUU_CCAGUCGUAAAAAA
...((((.(((((..(((((((.(((............))))))))))...)))))................(((((.(......).))))).................))))....... (-20.64 = -22.17 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:32 2006