Locus 7885

Sequence ID 3L_DroMel_CAF1
Location 21,034,021 – 21,034,136
Length 115
Max. P 0.680040
window12830

overview

Window 0

Location 21,034,021 – 21,034,136
Length 115
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.58
Mean single sequence MFE -18.60
Consensus MFE -17.72
Energy contribution -17.50
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.37
Structure conservation index 0.95
SVM decision value 0.30
SVM RNA-class probability 0.680040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21034021 115 + 23771897
CUUUUUUGGAGACCUGAAACGAUAGAA-AAAUCGGAGAGCUCGCUUUAAAACCUUGAUUAUUAAAUCAAUUAGGUGUACGAAAAAAAGACAAAA----AACAAAAAAUAAUACUAAAUUU
.(((((((.(.((((((..((((....-..)))).((((....))))......((((((....)))))))))))).).))))))).........----...................... ( -18.20)
>DroSec_CAF1 89152 118 + 1
CUUUUUUGGAGACCUGAAACGAUAGAA--AAUCGGAGAGCUCGCUUUAAAACCUUGAUUAUUAAAUCAAUUAGGUGUACGAAAAAAAGACAAAAACAAAAAAAAAAAUACUACUAAAUUU
.(((((((.(.((((((..((((....--.)))).((((....))))......((((((....)))))))))))).).)))))))................................... ( -18.00)
>DroEre_CAF1 10825 111 + 1
CUUUUUUGGAGACCUGAAACGAUAGAAAAAAUCGGAGAGCCCGCUUUAAAACCUUGAUUAUUAAAUCAAUUAGGUGUACGAAAAAAGGAGAAG---------AAAAAUAAUACUACGUUU
(((((((.((.((((((..((((.......)))).((((....))))......((((((....)))))))))))).).).)))))))......---------.................. ( -19.60)
>consensus
CUUUUUUGGAGACCUGAAACGAUAGAA_AAAUCGGAGAGCUCGCUUUAAAACCUUGAUUAUUAAAUCAAUUAGGUGUACGAAAAAAAGACAAAA____AA_AAAAAAUAAUACUAAAUUU
(((((((..(.((((((..((((.......)))).((((....))))......((((((....)))))))))))).)....)))))))................................ (-17.72 = -17.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:26 2006