Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,033,503 – 21,033,623 |
Length | 120 |
Max. P | 0.863931 |
Location | 21,033,503 – 21,033,623 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -34.34 |
Consensus MFE | -34.31 |
Energy contribution | -34.31 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 1.00 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21033503 120 + 23771897 UUUGUUAGCCGUCUAAAAAUAACGCCAAGAGUUCAGACUUAAGGAUCUGGCACUGCGCGCGCGUGUGUGUGAAAGGUUCUUUUUUAAUGGUCAAGCACUUGGGCAGCGAACAAAAAAAAA ((((((.((.((((((.......((((.((((....))))((((((((..(((.(((((....))))))))..))))))))......)))).......)))))).)).))))))...... ( -34.34) >DroSec_CAF1 88629 120 + 1 UUUGUUAGCCGUCUAAAAAUAACGCCAAGAGUUCAGACUUAAGGAUCUGGCACUGCGCGCGUGUGUGUGUGAAAGGUUCUUUUUUAAUGGUCAAGCACUUGGGCAGCGAACAAAAAAAAA ((((((.((.((((((.......((((.((((....))))((((((((..(((.(((((....))))))))..))))))))......)))).......)))))).)).))))))...... ( -34.34) >DroEre_CAF1 10285 116 + 1 UUUGUUAGCCGUCUAAAAAUAACGCCAAGAGUUCAGACUUAAGGAUCUGGCACUGCGCGCGUGUGUGUGUGAAAGGUUCUU--UUAAUGGUCAAGCACUUGGGCAGCGAACAAAA--AAA ((((((.((.((((((.......((((.((((....))))((((((((..(((.(((((....))))))))..))))))))--....)))).......)))))).)).)))))).--... ( -34.34) >consensus UUUGUUAGCCGUCUAAAAAUAACGCCAAGAGUUCAGACUUAAGGAUCUGGCACUGCGCGCGUGUGUGUGUGAAAGGUUCUUUUUUAAUGGUCAAGCACUUGGGCAGCGAACAAAAAAAAA ((((((.((.((((((.......((((.((((....))))((((((((..(((.(((((....))))))))..))))))))......)))).......)))))).)).))))))...... (-34.31 = -34.31 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:25 2006