Locus 7882

Sequence ID 3L_DroMel_CAF1
Location 21,031,556 – 21,031,676
Length 120
Max. P 0.515510
window12826

overview

Window 6

Location 21,031,556 – 21,031,676
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -29.32
Consensus MFE -25.74
Energy contribution -26.30
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.88
SVM decision value -0.04
SVM RNA-class probability 0.515510
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21031556 120 + 23771897
UCAAGUUUCACACUUUUUGGCAGCCAGCAAUUAAAUUGAAAUUAACCGGCAUUGUGAGAAAAAUUAAGUUAUUCAUAGAAAGGUGUUGGUGGACAUUGUCUCGCCAGAAACUAAUAAUAG
...(((((((((((((((....(((......................)))..((((((.((.......)).)))))))))))))))((((((((...))).)))))))))))........ ( -26.95)
>DroSec_CAF1 86651 120 + 1
UCAAGUUUCACACUUUUUGGCAGCCAGCAAUUAAAUUGAAAUUAGCCGGCAUUGUGAGAAAAAUUAAGUUAUUCAUAGAAAGGUGUUGGUGGACAUUGUCUCGCCAGAAACUAAUAAUAG
...(((((((((((((((....(((.((((((.......)))).)).)))..((((((.((.......)).)))))))))))))))((((((((...))).)))))))))))........ ( -31.60)
>DroEre_CAF1 8322 120 + 1
UCAUGUUUCGCACUUUUUGGCAGCCAGCAAUUAAAUUGAAAUUAGCCGGCAUUGUGUGAAAAAUUAAGUUAUUCACAGAAAGGUGUUGCUGGACAUUGUCUCGCCAGAAACUAAUAAUAG
....((((((((((((((....(((.((((((.......)))).)).)))....((((((.(((...))).))))))))))))))).((.((((...)))).))..)))))......... ( -29.40)
>consensus
UCAAGUUUCACACUUUUUGGCAGCCAGCAAUUAAAUUGAAAUUAGCCGGCAUUGUGAGAAAAAUUAAGUUAUUCAUAGAAAGGUGUUGGUGGACAUUGUCUCGCCAGAAACUAAUAAUAG
....((((((((((((((....(((.((((((.......)))).)).)))..((((((.((.......)).)))))))))))))))((((((((...))).))))))))))......... (-25.74 = -26.30 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:22 2006