| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,031,139 – 21,031,251 |
| Length | 112 |
| Max. P | 0.906899 |
| Location | 21,031,139 – 21,031,251 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.03 |
| Mean single sequence MFE | -26.14 |
| Consensus MFE | -15.80 |
| Energy contribution | -16.13 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21031139 112 - 23771897 --------AAGGGCCAAUGCAAAGCGUGCUCUGAAUAGAACUAUUAAUGUGUGCAUACAUACAUAUGUACAUAUAUACGAGUAUGAAGAUUUAGGGGCCAAAAGCAUUUAGAGCAGAGCG --------...((((.........(((((((..((((....)))).(((((((((((......)))))))))))....)))))))..........))))....((.......))...... ( -29.31) >DroSec_CAF1 86234 107 - 1 CCGAAGAUAAGGGCCAAUGCAAGGCGUGCUCUGAAUAGAACUAUGAAUGUGCACAU------------ACAUAUAGACGAGUAUGAAGAUUUAGGGG-CAAAAGCAUUUAGGGCAGAGCU ((........))(((.......))).((((((((((....((.(((((.(...(((------------((..........))))).).))))).))(-(....))))))))))))..... ( -24.40) >DroEre_CAF1 7923 102 - 1 CCGAAGAUAAAAGCCAAUGCGAAGCGUGCCCUGAAUAGAACUAUA------------UAUGAAUGUGUACACAUA------UAUGAAGAUUUAGGGGCCAAAAGCAUUUGGGGCAGAGCU ............((((((((.....((.((((((((.....((((------------((((..((....))))))------))))...)))))))))).....)))))...)))...... ( -24.70) >consensus CCGAAGAUAAGGGCCAAUGCAAAGCGUGCUCUGAAUAGAACUAUAAAUGUG__CAU__AU__AU_UGUACAUAUA_ACGAGUAUGAAGAUUUAGGGGCCAAAAGCAUUUAGGGCAGAGCU ............((....))...((.((((((((((.................................(((((......)))))...........((.....))))))))))))..)). (-15.80 = -16.13 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:21 2006