| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,030,863 – 21,030,981 |
| Length | 118 |
| Max. P | 0.756084 |
| Location | 21,030,863 – 21,030,981 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.24 |
| Mean single sequence MFE | -35.71 |
| Consensus MFE | -23.18 |
| Energy contribution | -23.61 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21030863 118 - 23771897 AGAUUGAGGUGCCGGCGCUUCGCGUUGAGGAAGGGAGAUAUAUUCGUAUA--UACACUCAUAUAUGUAUGUACAUAUAUGCAUUCCCUAAGGCGGGUCUUCUGCACAACCAUCGACCAUA .....((((((....))))))(.(((((((.((((((.(((((..(((((--((((........)))))))))..)))))..))))))...((((.....))))....)).))))))... ( -37.80) >DroSec_CAF1 85956 120 - 1 AGAUUGAGGUGCCGGCGCUUCGCAUUGAGGAAGGGAGAUAUAUUCGUAUAUAUACGCUCAUAUAUGUAUGUAUGUAUAUGCAUUCCCUAAGGCGGGUCUUCUGCACAACCGUCGACCAUA .((((((((((....))))))).)))..((.((((((((((((.((((((((((......))))))))))...))))))...))))))..(((((.............)))))..))... ( -35.22) >DroEre_CAF1 7661 102 - 1 AGAUUGAGGUGCCGGCGCUUCGAAUUGAGGAAGGGAGUUAUAU------A--UACAUACAUAUAU------AUGUA----UACUCCCUAAGGCGGGUCUUCUGCACAAUCGUCGACCAUA ...((((((((....)))))))).((((.((((((((((((((------(--((........)))------)))))----.)))))))...((((.....))))....)).))))..... ( -34.10) >consensus AGAUUGAGGUGCCGGCGCUUCGCAUUGAGGAAGGGAGAUAUAUUCGUAUA__UACACUCAUAUAUGUAUGUAUGUAUAUGCAUUCCCUAAGGCGGGUCUUCUGCACAACCGUCGACCAUA .....((((((....))))))...((((((.((((((((((((.((((((..............)))))).)))))).....))))))...((((.....))))....)).))))..... (-23.18 = -23.61 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:20 2006