Locus 788

Sequence ID 3L_DroMel_CAF1
Location 2,355,103 – 2,355,210
Length 107
Max. P 0.852854
window1212

overview

Window 2

Location 2,355,103 – 2,355,210
Length 107
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 74.14
Mean single sequence MFE -40.05
Consensus MFE -19.89
Energy contribution -20.08
Covariance contribution 0.20
Combinations/Pair 1.30
Mean z-score -1.94
Structure conservation index 0.50
SVM decision value 0.80
SVM RNA-class probability 0.852854
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2355103 107 + 23771897
CAGUGCAGAUGCACGGGUAGAAAAGAGGCCUAUCCGGCUGUGCCUCGCAUCUGCACACGCGGCAAAUGUCGCCCUGCGACAGGUCGUCCAUACUGAUAACUUUU-UC---C
..((((((((((..((((((.........))))))(((...)))..))))))))))..(((((...((((((...)))))).))))).................-..---. ( -43.80)
>DroVir_CAF1 116373 110 + 1
CCGUGCAAAUGCAGGGAUAGAAGAGCGGGCGAUCUGGCAACGCCUCGCAGCGGCAGACGCGACAGAUGUCGCCCUGCGAGAGAUCAUCCAUUUUGCUACGUUUG-UUGUCC
((.(((....))).))...((.((((((((((..(((.....((((((((.(((.(((((....).)))))))))))))).).....)))..))))).))))).-...)). ( -43.40)
>DroPse_CAF1 134477 93 + 1
CCGUGCAGAUGCACGGAUAGAAGAGCGGGCGGUCCUGCUGCGCCUCGCAGCGGCACACGCGACAAAUGUCGCCCUGCGACAGAUCGUCCAUCG------------------
((((((....))))))......((..((((((((.(((((((...)))))))(((...(((((....)))))..)))....)))))))).)).------------------ ( -45.30)
>DroWil_CAF1 196945 107 + 1
CAGUGCAAAUGCAAGGAUAAAAUAAAGGACGAUCCUGCUGGGCCUCGCAUCGGCAAACGCGACAAAUGUCGCCCUGCGACAGAUCAUCCAUUGUGGAAAUUGAU-UC---U
...(((....)))(((((...((((.(((.((((.(((.(((((.......)))....(((((....))))))).)))...)))).))).))))........))-))---) ( -29.30)
>DroMoj_CAF1 112178 111 + 1
CAGUGCAGAUGCAUGGAUAAAAGAGCGGUCUAUCUGGCAAUGCCUCGCAGCGGCAGACGCGACAUAUGUCGCCCUGCGACAGGUCAUCCAAUGUUGUACGUCUGGGUAUGC
..(((((...((((((((......((((((.....)))..((((.......))))..)))(((...((((((...)))))).))))))).)))))))))............ ( -36.30)
>DroAna_CAF1 99963 106 + 1
CCGUACAGAUGCACGGGUAGAAUAGCGGUCUGUCCGGCUGCGCCUCGCAGCGACAGACGCGACAAAUGUCGCCUUGCGACAAGUCAUCCAUCCUGCAAGUUG-C-CU---C
.........((((.((((.((...(((.((((((..((((((...)))))))))))))))(((...((((((...)))))).))).)).)))))))).....-.-..---. ( -42.20)
>consensus
CAGUGCAGAUGCACGGAUAGAAGAGCGGGCGAUCCGGCUGCGCCUCGCAGCGGCAGACGCGACAAAUGUCGCCCUGCGACAGAUCAUCCAUUGUGCUAAGUGUG_UU___C
..((((....))))((((.......(((.....)))........((((((.(.....)(((((....))))).))))))......))))...................... (-19.89 = -20.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:12 2006