Locus 7879

Sequence ID 3L_DroMel_CAF1
Location 21,030,248 – 21,030,359
Length 111
Max. P 0.812895
window12823

overview

Window 3

Location 21,030,248 – 21,030,359
Length 111
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.50
Mean single sequence MFE -27.12
Consensus MFE -17.43
Energy contribution -17.56
Covariance contribution 0.13
Combinations/Pair 1.20
Mean z-score -2.33
Structure conservation index 0.64
SVM decision value 0.65
SVM RNA-class probability 0.812895
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21030248 111 - 23771897
AGUCUUAUAGCACUGUCGCUAUUAAAAGAUCGAUAAAUUUUAAGGAAGUCGUUGUUAUUACGCAUA---------CAUAUUCGUUACUUUCCUAACGACCAUGUUCAGCAUAACAAUGAA
.((((((((((......)))))...)))))..................((((((((((...((..(---------(((..((((((......))))))..))))...)))))))))))). ( -25.00)
>DroSec_CAF1 85264 120 - 1
AGUCUUAUAGCCCUUUUGCUAUUAAAAGAUCGAUAAAUCAUAAGGAAGUCGUUGUUAUUAUGCAUAUCCAUGCCAUAUAUUCGUUACUUUCCUAACGACCAUGUGCAGCAUAACAAUGAA
.((((((((((......)))))...)))))..................((((((((((..(((((((.............((((((......))))))..)))))))..)))))))))). ( -25.26)
>DroEre_CAF1 6937 120 - 1
AGUUCUACAGUUAUGUUGCAUUUAAAAGAUCGAUAAAUCAGAGGGAAGUCGUUGUUAUUAUGCAUAUUCGUGUAAUAUAUUUGUUACUUUCCUAACGACCAUGUGCAGCAUAGCAAUGAU
.........((((((((((((......(((......)))..((((((((((....((((((((......))))))))....))..)))))))).........))))))))))))...... ( -31.10)
>consensus
AGUCUUAUAGCACUGUUGCUAUUAAAAGAUCGAUAAAUCAUAAGGAAGUCGUUGUUAUUAUGCAUAU_C_UG__AUAUAUUCGUUACUUUCCUAACGACCAUGUGCAGCAUAACAAUGAA
..(((((((((......))))).....(((......)))...))))..((((((((((..(((((((.............((((((......))))))..)))))))..)))))))))). (-17.43 = -17.56 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:19 2006