Locus 7877

Sequence ID 3L_DroMel_CAF1
Location 21,029,864 – 21,029,970
Length 106
Max. P 0.727303
window12820

overview

Window 0

Location 21,029,864 – 21,029,970
Length 106
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.75
Mean single sequence MFE -22.87
Consensus MFE -23.07
Energy contribution -23.73
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.17
Structure conservation index 1.01
SVM decision value 0.41
SVM RNA-class probability 0.727303
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21029864 106 - 23771897
AUACAAA--------------AAACUUAAGUAUCGAACAACAAACAGUCGAGGACCAGACUUGACUUCAAACUCUGAUCUCCUGAGUGCCCCGAGCUGAUCUCUGAACUGUUUCGUUGUU
.......--------------..............(((((((((((((((..((.(((.((((.......((((.........))))....))))))).))..)).))))))).)))))) ( -26.20)
>DroSec_CAF1 84887 106 - 1
AUACAAA--------------AAACUUAAGUAUCGAACAACAAACAGUCGAGGACCAGACUUGACUUCAAACUCUGAUCUCCUGAGUGCCCCGAGCUGAUCUCUGAACUGUUUCGUUGUU
.......--------------..............(((((((((((((((..((.(((.((((.......((((.........))))....))))))).))..)).))))))).)))))) ( -26.20)
>DroEre_CAF1 6545 120 - 1
AUACAAAAACUAAAUGCAAAAAAACUUAAGUAUCGAACAACAAACAGUCGAGGACCAGACUUGACUUCAAACUCUGAUCUCCUGAGUGCCCCGAGCUGAUCUCUGAACUAUUUCGCUGUU
..........................................((((((.((((..(((.((((.......((((.........))))....))))))).)))).(((....))))))))) ( -16.20)
>consensus
AUACAAA______________AAACUUAAGUAUCGAACAACAAACAGUCGAGGACCAGACUUGACUUCAAACUCUGAUCUCCUGAGUGCCCCGAGCUGAUCUCUGAACUGUUUCGUUGUU
...................................(((((((((((((((..((.(((.((((.......((((.........))))....))))))).))..)).))))))).)))))) (-23.07 = -23.73 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:16 2006