Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,029,704 – 21,029,824 |
Length | 120 |
Max. P | 0.734254 |
Location | 21,029,704 – 21,029,824 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -27.42 |
Energy contribution | -27.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.93 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21029704 120 + 23771897 AACUUGUUGCAGGCUUAUUAAUUUGGCUCGGAGCACCGAGAGCACAACUAAAACAAGUUGAUUUAGGUGAAGUAAUUUGCGUGCAACCAGACACUAAACACUGAAACCGAACACUAAACA ..((.((((((.((..((((.(((..(((((....)))))....(((((......)))))........))).))))..)).)))))).)).............................. ( -28.00) >DroSec_CAF1 84727 120 + 1 AACUUGUUGCAGGCUUAUUAAUUUGGCUCGGAGCACCGAAAGCUCAACUAAAACAAGUUGAUUUAGGUGAAGUAAUUUGCGUGCAGCCAGACACUAAACAGUGAAACCGAACACUAAACA ..((.((((((.((..((((.(((.((((((....))))....((((((......)))))).....)).)))))))..)).)))))).)).((((....))))................. ( -31.00) >DroEre_CAF1 6385 120 + 1 AACUUGUUGCAGGCUUAUUAAUUUGGCUCGGAGCACCGAAAGCACAACUAAAACAAGUUGAUUUAGGUGAAGUAAUUUGCGUGCAGCCAGACACUAAACACUGAAACCGAGCACUAAACA ....((((..((((((.....((((((((((....))))..((((..(((((.(.....).)))))(..((....))..))))).))))))((........)).....)))).)).)))) ( -29.80) >consensus AACUUGUUGCAGGCUUAUUAAUUUGGCUCGGAGCACCGAAAGCACAACUAAAACAAGUUGAUUUAGGUGAAGUAAUUUGCGUGCAGCCAGACACUAAACACUGAAACCGAACACUAAACA ..((.((((((.((..((((.(((.(((..((((.......)).(((((......))))).))..))).)))))))..)).)))))).)).............................. (-27.42 = -27.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:15 2006