Locus 7874

Sequence ID 3L_DroMel_CAF1
Location 21,027,351 – 21,027,462
Length 111
Max. P 0.871493
window12815

overview

Window 5

Location 21,027,351 – 21,027,462
Length 111
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.88
Mean single sequence MFE -35.27
Consensus MFE -32.24
Energy contribution -32.13
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -2.08
Structure conservation index 0.91
SVM decision value 0.87
SVM RNA-class probability 0.871493
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21027351 111 - 23771897
CUUUAG-------AGGGGCCAUGAGGUAGAAUUGAACUGA--CUGCAGCACACUGGAUUGUUCCCACAGUUCUCCCAGACGACUUCGUCAUCAUCGUCGCCCCACGUCAACCUCUAAUAC
..((((-------((((((.((((((.(((((((..(((.--...)))......(((....)))..))))))).)).((((....))))....)))).)))))..(....).)))))... ( -34.30)
>DroSec_CAF1 82404 113 - 1
CUUUAG-------AGGGGCCAUGAGGUAGAAUUGAACUGACACUGCAGCAGACUGGAUUGUUCCCACAGUUCUCCCAGACGCCUUCGUCAUCAUCGUCGCCCCACGUCAACCUCUAAUAC
..((((-------((((((.((((((.(((((((....((((.(.(((....))).).))))....))))))).)).((((....))))....)))).)))))..(....).)))))... ( -34.50)
>DroEre_CAF1 4042 118 - 1
CUUUAGGGGCUUCAGGGGCCACGGGGCAGAAUUGCACUGA--CUGCAGCACACUGGAUUGUUCCCACAGUACUCCCAGACGCCUUCGUCAUCAUCGUCGCCCCACGUCAACCUCUAAUAC
..(((((((.....(((((.((((((.((..(((((....--.)))))...((((...........)))).))))).((((....)))).....))).))))).......)))))))... ( -37.00)
>consensus
CUUUAG_______AGGGGCCAUGAGGUAGAAUUGAACUGA__CUGCAGCACACUGGAUUGUUCCCACAGUUCUCCCAGACGCCUUCGUCAUCAUCGUCGCCCCACGUCAACCUCUAAUAC
..............(((((.((((((.(((((((..(((......)))......(((....)))..))))))).)).((((....))))....)))).)))))................. (-32.24 = -32.13 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:11 2006