| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,026,002 – 21,026,122 |
| Length | 120 |
| Max. P | 0.881683 |
| Location | 21,026,002 – 21,026,122 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.89 |
| Mean single sequence MFE | -33.33 |
| Consensus MFE | -32.07 |
| Energy contribution | -32.73 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21026002 120 - 23771897 GGGGCGCUCAUGUACAAGUUAUGGACGUGAGAAAUCCUCAAAUAAUUGGAAACGAGCGCUUUCAUUUGCAGCUGGGAGUGCAGAAAAAUAAGUGUAAUCCCAAAAGUAAUCAACGGGGAA ((((..(((((((.((.....)).)))))))....))))......(((....)))(((((..((........))..)))))................((((....((.....)).)))). ( -34.30) >DroSec_CAF1 81021 120 - 1 GGGGCGCUCAUGUACAAGUUAUGGACGUGAGAAAUCCUCAAAUAAUUGGAAACGAGCGCUUUCAUUUGCAGCCGGGAGUGCAGAAAAAUAAGUGUAAUCCCAAAAGUAAUCAACGGGGAA ((((..(((((((.((.....)).)))))))....))))......(((....)))((((((...((((((..(....))))))).....))))))..((((....((.....)).)))). ( -32.90) >DroEre_CAF1 2724 120 - 1 GGGGCGCUCAUGUACAAGUUAUGGACGUGAGAAAUCCUCAAAUAAUUGGAAACGCGCGCUUUCAUUUGCAGCUGGGAGUGCAGAAAAAUAAGUGUAAUCCCAAAAGUAAUCAACGGGGAA ((((..(((((((.((.....)).)))))))....))))........(....)..(((((..((........))..)))))................((((....((.....)).)))). ( -32.80) >consensus GGGGCGCUCAUGUACAAGUUAUGGACGUGAGAAAUCCUCAAAUAAUUGGAAACGAGCGCUUUCAUUUGCAGCUGGGAGUGCAGAAAAAUAAGUGUAAUCCCAAAAGUAAUCAACGGGGAA ((((..(((((((.((.....)).)))))))....))))......(((....)))(((((..((........))..)))))................((((....((.....)).)))). (-32.07 = -32.73 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:10 2006