Locus 7872

Sequence ID 3L_DroMel_CAF1
Location 21,023,394 – 21,023,514
Length 120
Max. P 0.926850
window12813

overview

Window 3

Location 21,023,394 – 21,023,514
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.18
Mean single sequence MFE -40.83
Consensus MFE -25.73
Energy contribution -25.40
Covariance contribution -0.33
Combinations/Pair 1.08
Mean z-score -2.56
Structure conservation index 0.63
SVM decision value 1.18
SVM RNA-class probability 0.926850
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21023394 120 + 23771897
UGGCUGGCAACCGUCAAUUAGCUAAAGCGGAUCGUUGCCACGCCCCCGAAAUGAAGGCGGCAGGGAUGGUGUGGCGCCACAAAAAAGUAAGACCAAAAGCCGCUGUCUUAUUGCUGGGAA
.((((((((((.(((.....((....)).))).))))))).)))((((.(((((.((((((.((.((..((((....)))).....))....))....))))))...)))))..)))).. ( -43.80)
>DroSec_CAF1 78438 116 + 1
----UGGCAACCAUCAAUUAGCUAAAGCGGAUCGUUGCCACGCCCCCGAAAUGAAGGCGGCAGGGAUGGUGUGGCGCCACAAAAAAGUAAGACCAAAAGCCGCUGUCUCAUUUCUGGGAA
----(((((((.(((.....((....)).))).)))))))...(((.(((((((.((((((.((.((..((((....)))).....))....))....))))))...))))))).))).. ( -43.50)
>DroEre_CAF1 2 99 + 1
--------------------GCUAAAGCGGAUCGCUGCCACGCCUCCGAAAUGA-GGCGGGAGGAAUGAUGUGGCGCCACAAAAAGUGGAAACCAAAAGCCGCUGUCUCAUUGCUGGGAA
--------------------.....((((((((.((.((.((((((......))-)))))).))...))).(((..((((.....))))...)))....))))).(((((....))))). ( -35.20)
>consensus
____UGGCAACC_UCAAUUAGCUAAAGCGGAUCGUUGCCACGCCCCCGAAAUGAAGGCGGCAGGGAUGGUGUGGCGCCACAAAAAAGUAAGACCAAAAGCCGCUGUCUCAUUGCUGGGAA
.........................(((((...(.((((((((((((....((....))...)))..))))))))).)...............(....)))))).(((((....))))). (-25.73 = -25.40 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:09 2006