Locus 7870

Sequence ID 3L_DroMel_CAF1
Location 21,016,615 – 21,016,724
Length 109
Max. P 0.773237
window12810

overview

Window 0

Location 21,016,615 – 21,016,724
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 78.06
Mean single sequence MFE -31.65
Consensus MFE -13.95
Energy contribution -15.67
Covariance contribution 1.72
Combinations/Pair 1.13
Mean z-score -2.07
Structure conservation index 0.44
SVM decision value 0.54
SVM RNA-class probability 0.773237
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21016615 109 + 23771897
UGUUAAUUUAUUUGCUCCUCUCUUUCAGU-CGCUGCCCGCCGGGCAGAAACAAACCGAAAACAAAGCUGGUUGUA------GGGGGGAGGGAUGGGGG----GAAAAGUAAUAAAUUGCC
...(((((((((..((((((((((((.((-..((((((...))))))..))...((...(((.......)))...------))...)))))).)))))----)......))))))))).. ( -34.50)
>DroSim_CAF1 42505 99 + 1
UGUUAAUUUAUUUGCUCCUCUCUUUCAGU-CGCUGCCCGGCGGGCAGAAACAAACCGAAAACAAAGCUGGUUGCA------GGGGGGA--------------AAAUAGUAAUAAAUUGCC
...(((((((((.((((((((((....((-..((((((...))))))..)).(((((..........)))))..)------)))))))--------------.....))))))))))).. ( -28.40)
>DroEre_CAF1 43076 98 + 1
UGUUAAUUUAUUUGCUCCUCUCCUCCAGU-UGCUGCCCGUCGGGCAGAAACAAACUGAAAACAAAGCUGGUCGAA------GGGG-GA--------------AAAUAGUAAUAAAUUGCC
(((((...(((((.((((..((..(((((-(.((((((...)))))).................))))))..)).------.)))-).--------------))))).)))))....... ( -29.67)
>DroYak_CAF1 43516 99 + 1
UGUUAAUUUAUUUGCUCCUCUCUUUCAGUUUGCUGCCCGACGGGCAGAAACAAACUGAAAACAAAGCUGGUUGAA------GGGG-GA--------------AAAUAGUAAUAAAUUGCC
(((((...(((((.((((..((((((((((((((((((...))))))...)))))))))).((....))...)).------.)))-).--------------))))).)))))....... ( -30.70)
>DroAna_CAF1 30575 119 + 1
UGUUAAUUUAUUUGCUCCUCUCUUUCGGU-CUGGGGGCCUCGGGGUUCCAAAAAGCGAAAACAAAGCUGGUAUAACUUUUGCUGGACCUGGACCGGGGGUAUAAAUAGUAAUAAAUUGCC
...(((((((((.(((.....((..((((-(..((.(((....)))(((....(((.........)))((((.......)))))))))..)))))..)).......)))))))))))).. ( -35.00)
>consensus
UGUUAAUUUAUUUGCUCCUCUCUUUCAGU_CGCUGCCCGUCGGGCAGAAACAAACCGAAAACAAAGCUGGUUGAA______GGGG_GA______________AAAUAGUAAUAAAUUGCC
...(((((((((..((((((..(((((((...((((((...))))))......))))))).((....))............))))))......................))))))))).. (-13.95 = -15.67 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:06 2006