Locus 7868

Sequence ID	3L_DroMel_CAF1
Location	21,014,306 – 21,014,419
Length	113
Max. P	0.763046

overview

Window 6

Location	21,014,306 – 21,014,419
Length	113
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	90.60
Mean single sequence MFE	-30.25
Consensus MFE	-25.36
Energy contribution	-25.68
Covariance contribution	0.31
Combinations/Pair	1.04
Mean z-score	-1.68
Structure conservation index	0.84
SVM decision value	0.51
SVM RNA-class probability	0.763046
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21014306 113 - 23771897
CCCAUUAUUUAGAUGA-CAUUAUUCACAGUGUAAUUUUACAGCUGCAGGCGGCAGCAGAAAGUGAAAACUUGAAAAAUUGAUUAUGCAACUGCCGCAAGGACGUUUGCGGCCAA
..((((.....)))).-...........((((((((.....(((((.....)))))...((((....))))........))))))))....((((((((....))))))))... ( -29.40)
>DroSim_CAF1 40030 113 - 1
CCCAUUAUUUAGGUGA-CAUUAUUCACUGUGUAACUUUACAGCUGCAGGCUGCAGCGGAAAGUGAAAACUUGAAAAAUUGAUUAUGCAACUGCCGCAAGGACGUUUGUGGCCAA
...........(((.(-((...((((..((...(((((...(((((.....)))))..)))))....)).)))).............(((..((....))..)))))).))).. ( -30.20)
>DroEre_CAF1 40277 114 - 1
CCUAUUUUCUUAUUCACUAUUACUCACUGUGUAAUUUUACAGCUGCAGGCUGCUGCGGAAAGUGAAAACUUGAAAAAUUGAUUAUGCAACUGCCGCAAGGACGUUUGUGGCCAA
....(((((...((((((........(((((......)))))((((((....))))))..)))))).....)))))...............((((((((....))))))))... ( -29.90)
>DroYak_CAF1 41184 110 - 1
CCUAUUUUGGUG---A-CAUUAUUCACUGUGUAAUUUUACAGCUGCAGGCUGCAGCGGAAAGUGAAAACUUGAAAAAUUGAUUAUGCAACUGCCGCAAGGACGUUUGUGGCCAA
......(((((.---(-((.........((((((((.....(((((.....)))))...((((....))))........))))))))(((..((....))..)))))).))))) ( -31.50)
>consensus
CCCAUUAUUUAG_UGA_CAUUAUUCACUGUGUAAUUUUACAGCUGCAGGCUGCAGCGGAAAGUGAAAACUUGAAAAAUUGAUUAUGCAACUGCCGCAAGGACGUUUGUGGCCAA
............................((((((((.....(((((.....)))))...((((....))))........))))))))....((((((((....))))))))... (-25.36 = -25.68 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:02 2006