Locus 7867

Sequence ID 3L_DroMel_CAF1
Location 21,013,161 – 21,013,251
Length 90
Max. P 0.984572
window12805

overview

Window 5

Location 21,013,161 – 21,013,251
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 94.78
Mean single sequence MFE -25.42
Consensus MFE -23.38
Energy contribution -24.42
Covariance contribution 1.04
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.92
SVM decision value 1.98
SVM RNA-class probability 0.984572
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21013161 90 - 23771897
AAUGGGGCAGUCGUUCGUCCAAUGAUUAGCCAUAUAAGCGGGCCAGUUGCACAUGUUUUUGGUUUUUCACUGACCAUACCACCUGUCUCC
...(((((((..((..(((...(((..(((((...(((((.((.....))...))))).)))))..)))..)))...))...))))))). ( -24.10)
>DroSec_CAF1 30755 90 - 1
AAUGGGGCAUUCGUUCGUCCAGUGAUUAGCCAUAUAAGCAGGCCAGUUGCACAUGUUUUUGGUUUUUCACUGACCAUACCACCUGUCUCC
...((((((...((..(..((((((..(((((...(((((.((.....))...))))).)))))..))))))..)..))....)))))). ( -27.20)
>DroSim_CAF1 38925 90 - 1
AAUGGGGCACUCGUUCGUCCAGUGAUUAGCCAUAUAAGCAGGCCAGUUGCACAUGUUUUUGGUUUUUCACUGACCAUACCACCUGUCUCC
...((((((...((..(..((((((..(((((...(((((.((.....))...))))).)))))..))))))..)..))....)))))). ( -27.20)
>DroEre_CAF1 39346 89 - 1
AAUGGGGCAGUCGUUCGUCCGGUGAUUAGCCAUAUAAGCAGGCCAGUUGCACAUGUU-UAGCUUUUUCUCUGACCAUGCCAACUGUCUCC
...((((((((.((..(..(((.((..(((....((((((.((.....))...))))-)))))...)).)))..)..))..)))))))). ( -22.90)
>DroYak_CAF1 40154 90 - 1
AAUGGGGCAGUCGUUCGUCCGGUGAUUAGCCAUAUAAGCAGGCCAGUUGCACAUGUUUUUGGUUUUUCUCUGACCAUACCACCUGUCUCC
...(((((((..((..(..(((.((..(((((...(((((.((.....))...))))).)))))..)).)))..)..))...))))))). ( -25.70)
>consensus
AAUGGGGCAGUCGUUCGUCCAGUGAUUAGCCAUAUAAGCAGGCCAGUUGCACAUGUUUUUGGUUUUUCACUGACCAUACCACCUGUCUCC
...(((((((..((..(..((((((..(((((...(((((.((.....))...))))).)))))..))))))..)..))...))))))). (-23.38 = -24.42 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:01 2006