Locus 7866

Sequence ID 3L_DroMel_CAF1
Location 21,010,677 – 21,010,784
Length 107
Max. P 0.500000
window12804

overview

Window 4

Location 21,010,677 – 21,010,784
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 92.80
Mean single sequence MFE -30.90
Consensus MFE -25.84
Energy contribution -25.72
Covariance contribution -0.12
Combinations/Pair 1.17
Mean z-score -1.25
Structure conservation index 0.84
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21010677 107 + 23771897
UCAUUCUUCAGCACGUUGUUCUUAUACGCAAUGCCAUUGGCCAGUUGGAGGCACAGUUUCCGACUGUUGUUCAUGGUGGCAUCGUUAUUGGUGUUCUUGGCGUACUU
........................(((((...(((((..(((((((((((((...)))))))))))..))..)))))(((((((....)))))))....)))))... ( -32.20)
>DroGri_CAF1 23624 107 + 1
UCAUUCUUGAGCACAUUGUUCUUGUAGGCAAUGCCAUUGGCCAGCUGCAGGCAGAGCUUGCGACUGUUGUUCAUCGUUGCAUCGUUGUUGGUAUUCUUGGCAUACUU
........((((.....)))).........((((((...((((((.((((((...))))))(((...(((........)))..))))))))).....)))))).... ( -29.20)
>DroSec_CAF1 28297 107 + 1
UCAUUCUUCAGCACGUUGUUCUUGUACGCAAUGCCAUUGGCCAGUUGGAGGCACAGUUUCCGACUGUUGUUCAUGGUGGCAUCGUUAUUGGUGUUCUUCGCGUACUU
.......................((((((...(((((..(((((((((((((...)))))))))))..))..)))))(((((((....)))))))....)))))).. ( -35.60)
>DroEre_CAF1 36857 107 + 1
UCAUUCUUCAGCACGUUGUUCUUGUACGCAAUGCCAUUGGCCAGCUGGAGGCACAGUUUCCGACUGUUGUUCAUGGUGGCAUCGUUAUUGGUGUUCUUGGCGUACUU
.......................((((((...(((((..(((((.(((((((...))))))).)))..))..)))))(((((((....)))))))....)))))).. ( -30.70)
>DroYak_CAF1 37698 107 + 1
NCAUUCUUCAGCACGUUGUUCUUGUACGCAAUGCCAUUGGUCAGCUGGAGACACAGUUUUCGACUGUUGUUCAUGGUGGCAUCGUUAUUGGUGUUCUUGGCGUACUU
.......................((((((...(((((.((.(((.(((((((...))))))).)))....)))))))(((((((....)))))))....)))))).. ( -26.80)
>consensus
UCAUUCUUCAGCACGUUGUUCUUGUACGCAAUGCCAUUGGCCAGCUGGAGGCACAGUUUCCGACUGUUGUUCAUGGUGGCAUCGUUAUUGGUGUUCUUGGCGUACUU
.......................((((((...(((((..(((((.(((((((...))))))).)))..))..))))).((((((....)))))).....)))))).. (-25.84 = -25.72 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:59:00 2006