Locus 7865

Sequence ID 3L_DroMel_CAF1
Location 21,009,941 – 21,010,034
Length 93
Max. P 0.561731
window12803

overview

Window 3

Location 21,009,941 – 21,010,034
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.89
Mean single sequence MFE -29.35
Consensus MFE -22.29
Energy contribution -23.21
Covariance contribution 0.92
Combinations/Pair 1.15
Mean z-score -1.18
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.561731
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21009941 93 + 23771897
CGUUUGAUUAAGCUA--------AGAGGCCAAUAAGCUCCGGAAAACCCACAGCGAUGACCUCUGUUGGGGCGGAGGUGAUGCCUUU----UAUCUGGUCUAGAC
.(((((((((.(.((--------((((((......(((..((.....))..))).((.((((((((....)))))))).))))))))----)).)))))).)))) ( -31.60)
>DroSec_CAF1 27561 93 + 1
CGUUUGAUUAAGCUA--------AGAGGCUAAUAAGCUCCGGAAAACCCACAGCGAUGAUCUCUGUUGGGGCGGAGGUGAUGCCUUU----UCUCUGGCCUACAC
...........((((--------((((((.....(.(((((.....(((((((.(.....).))).)))).))))).)...))))))----....))))...... ( -27.50)
>DroSim_CAF1 36081 93 + 1
CGUUUGAUUAAGCUA--------AGAGGCCAAUAAGCUCCGGAAAACCCACAGCGAUGAUCUCUGUUGGGGCGGAGGUGAUGGCUUU----UCUCUGGCCUAGAC
.......(((.((((--------((((((((...(.(((((.....(((((((.(.....).))).)))).))))).)..)))))))----)...)))).))).. ( -30.60)
>DroEre_CAF1 36124 93 + 1
CGUUCGAUUAAGCUA--------AGAGGCUACGAAGCUCCGGAAAACCCACAGCGAUGAGCUCUGUUGGGGCGGAGGUGAUGCCUUU----UCUCUGGCCUAGAC
.......(((.((((--------((((((.....(.(((((.....(((((((.(.....).))).)))).))))).)...))))))----....)))).))).. ( -27.10)
>DroYak_CAF1 36655 101 + 1
CGUUUGAUUAAGCUAAGAAGCUAAGAGGCUAAGAUGCUCCGAAAAACCCACAGCGAUGAUCUCUGUUGGGGAGGAGGAGAUGCCUUU----UCUGUGGCCUAGAC
.......(((.((((...((..(((((((.....(.((((......(((((((.(.....).))).))))..)))).)...))))))----))).)))).))).. ( -28.70)
>DroAna_CAF1 23985 92 + 1
UUUUUGAUUAAACUA--------ACAGGCUCU--CUCUCCGGU--AUCCACAGUCCGGGUCUCUGUCG-GACGGAGAUGAGGCCUUUAGAGUCUAAGGAUUAAAC
............(((--------(.((((.((--((((((((.--..))...((((((.......)))-)))))))).)))))))))))((((....)))).... ( -30.60)
>consensus
CGUUUGAUUAAGCUA________AGAGGCUAAUAAGCUCCGGAAAACCCACAGCGAUGAUCUCUGUUGGGGCGGAGGUGAUGCCUUU____UCUCUGGCCUAGAC
.......(((.((((........((((((.....(.(((((.....(((((((.(.....).)))).))).))))).)...))))))........)))).))).. (-22.29 = -23.21 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:59 2006