| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,008,152 – 21,008,269 |
| Length | 117 |
| Max. P | 0.508530 |
| Location | 21,008,152 – 21,008,269 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 85.36 |
| Mean single sequence MFE | -52.83 |
| Consensus MFE | -37.79 |
| Energy contribution | -38.97 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21008152 117 - 23771897 CCGGAGCUGCAUACACAUUGCUGGGCGUGGCAAUCGCUGCCGUUGGCGGCAUGUUAAAUCGCAUCUUGGCUGCUGCAGCUGCAUUUGCUGCGGCCGCAAUGGCAGCGGCAUUUUCCC ..((((.(((......((((((......))))))(((((((((((((((((.(((((........))))))))))).((((((.....))))))..))))))))))))))..)))). ( -52.20) >DroSim_CAF1 34303 117 - 1 CCGGAGCUGCAUACACAUUGCUGGGCGUGGCAAUCGCUGCCGCUGGCGGCAUGUUAAAUCGCAUCUUGGCUGCUGCAGCUGCAUUUGCUGCGGCCGCAAUGGCAGCGGCAUUUUCCC ..((((((((.....((((((.((.((..((((....(((.((((.(((((.(((((........)))))))))))))).))).))))..)).))))))))...)))))....))). ( -53.00) >DroEre_CAF1 34343 117 - 1 CCGGAGCCGCAUACACAUUGCUGGGCGUGGCGAUCGCUGCCGUUGGCGGCAUGUUAAAUCGCAUCUUGGCUGCUGCAGCUGCAUUUGCUGCGGCCGCAAUGGCGGCGGCGUUUUCCC ..((((((((.....((((((.((.((..((((....(((.((((.(((((.(((((........)))))))))))))).))).))))..)).))))))))...)))))....))). ( -53.60) >DroWil_CAF1 4429 117 - 1 CGGGCGCUGCAUACACAUUACUUGGCCCGGCAAUGCCCGCCGAUUGGGGCAUAUUGUAACGAAUUUUUGCGGCCGCUGCGGCAUUCGCUGCAGCUGCUAUGGCCGCGGCAUUUUCAC .(((((.(((.....((.....)).....))).)))))(((..(((..((.....))..)))......((((((((((((((....))))))))......)))))))))........ ( -50.40) >DroYak_CAF1 31655 117 - 1 CCGGCGCUGCAUAUACAUUGCUGGGCGCGGCAAUCGCUGCCGUUGGCGGCAUGUUAAAUCGCAUCUUGGCUGCUGCAGCUGCAUUUGCUGCCGCCGCAAUGGCAGCGGCAUUUUCCC ..(.((((((.....((((((..((((((((((....(((.((((.(((((.(((((........)))))))))))))).))).)))))).)))))))))))))))).)........ ( -51.90) >DroAna_CAF1 22031 114 - 1 CCGGUGCCGCGUACACAUU---GGGCGUGGCAAUGGCCGCCGUGGGUGGCAUGUUAAAGCGCAUCUUGGCCGCUGCCGCAGCAUUGGCUGCCGCGGCUAUGGCAGCGGCAUUGUCCC .(((((((((.....((.(---(.((.(((((...((((((...)))))).)))))..)).))...))((((((((.(((((....))))).)))))...))).))))))))).... ( -55.90) >consensus CCGGAGCUGCAUACACAUUGCUGGGCGUGGCAAUCGCUGCCGUUGGCGGCAUGUUAAAUCGCAUCUUGGCUGCUGCAGCUGCAUUUGCUGCGGCCGCAAUGGCAGCGGCAUUUUCCC .....(((((.....((((((..((((((((....(((((.....)))))((((......))))....))))).(((((.......))))).)))))))))...)))))........ (-37.79 = -38.97 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:56 2006