| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,007,012 – 21,007,103 |
| Length | 91 |
| Max. P | 0.624918 |
| Location | 21,007,012 – 21,007,103 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.11 |
| Mean single sequence MFE | -17.88 |
| Consensus MFE | -14.90 |
| Energy contribution | -14.68 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21007012 91 - 23771897 UGUGCAGAUCCGUGUUCAGCAUGAUGAUGGCGAAAGCCAGGACGAAGAUCUUUAAGAUAAGAAA--AUAUAAAUUAGAAAUCGUACU--AAAUUU .((((.((((..(((((..(.....).((((....)))))))))..))))(((((.(((.....--.)))...)))))....)))).--...... ( -21.00) >DroSec_CAF1 24645 91 - 1 UGUGCAGAUCCGUGUUCAGCAUGAUGAUGGCAAAAGCCAGGACGAAGAUCUUUAAAAUAAUAAA--ACAUAAAUUAGAUAUCGUAAU--AAAUUA .....(((((..(((((..(.....).((((....)))))))))..))))).............--.....................--...... ( -13.70) >DroSim_CAF1 33164 91 - 1 UGUGCAGAUCCGUGUUCAGCAUGAUGAUGGCAAAAGCCAGGACGAAGAUCUUUAAAAUAAGAAA--ACAUAAAUUAGAUAUCGUAAU--AAAUUA .....(((((..(((((..(.....).((((....)))))))))..))))).............--.....................--...... ( -13.70) >DroEre_CAF1 33230 88 - 1 UGUGCAGAUCCGUGUUCAGCAUGAUGAUGGCAAAAGCCAGGACAAAGAUCUUUAAA---GGAAA--ACAUAAAUUAGAAAUGGU-CGU-AAUUCA ..((((((((..(((((..(.....).((((....)))))))))..))))).....---.....--......((((....))))-.))-)..... ( -16.10) >DroYak_CAF1 30523 92 - 1 UGUGGAGAUCCGUGUUCAGCAUGAUGAUGGCAAAAGCCAGGACAAAGAUCUUUAAAAUAAGAAA--ACAUAAAUUAGAGAUCGUACCA-AAUUAA ..(((...((((((.....))).....((((....)))))))....(((((((((.........--.......)))))))))...)))-...... ( -19.39) >DroAna_CAF1 20984 94 - 1 UGUGCAGAUCCGUGUUGAGCAUGAUGAUGGCGAAAGCCAGGACAAAGAUCUACA-GAUAACAAGGAUAAUGGGUUAGUGGGAUCACCAAGGAAGA ..((.(((((((((.....))))....((((....)))).......))))).))-(((..((..(((.....)))..))..)))........... ( -23.40) >consensus UGUGCAGAUCCGUGUUCAGCAUGAUGAUGGCAAAAGCCAGGACAAAGAUCUUUAAAAUAAGAAA__ACAUAAAUUAGAAAUCGUACU__AAAUUA ..((.(((((..(((((..(.....).((((....)))))))))..))))).))......................................... (-14.90 = -14.68 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:54 2006