Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,006,385 – 21,006,492 |
Length | 107 |
Max. P | 0.851408 |
Location | 21,006,385 – 21,006,492 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.10 |
Mean single sequence MFE | -48.19 |
Consensus MFE | -28.63 |
Energy contribution | -30.97 |
Covariance contribution | 2.34 |
Combinations/Pair | 1.26 |
Mean z-score | -2.05 |
Structure conservation index | 0.59 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21006385 107 - 23771897 CGAGGAGAUAGCAUGGUCAUCCGCUGGUGGCAUUCCUCCUGCCGCUGUAGCUGCUGCAACGGCAGCCUGCAUUUGA------GCGGCAUAAACGCCGGCU---CCUCCAGCCACUC---- .((((((...((...((((((....))))))........(((((((((((((((((...)))))).)))).....)------)))))).....))...))---)))).........---- ( -42.20) >DroSec_CAF1 24018 107 - 1 CGAGGAGAUGGCAUGGUCAUCAGCUGGUGGCAUUCCUCCUGCCGCUGUAGCUGCUGCAACGGCAGCCUGCAUUUGA------GCGGCAUAAACACCUGCU---CCGCCAGCCACUC---- .(((..((((((...)))))).((((((((((.......(((((((((((((((((...)))))).)))).....)------))))))........))).---.)))))))..)))---- ( -44.26) >DroSim_CAF1 32537 107 - 1 CGAGGAGAUGGCAUGGUCAUCAGCUGGUGGCAUUCCUCCUGCCGCUGUAGCCGCUGCAACGGCAGCCUGCAUUUGA------GCGGCAUAAACACCGGCU---CCGGCAGCCACUC---- ....(((.((((...(((...((((((((..........(((((.(((((...))))).)))))(((.((......------))))).....))))))))---..))).)))))))---- ( -44.10) >DroEre_CAF1 32603 107 - 1 CGAGGAGAUGGCAUGGUCGUCUGCUGGUGGUAUUCCUCCCGCCGCUGUGGCUGCUGCAACGGCAGCCUGCAUUUGA------GCGGCAUACACACCGGCU---CCUCCAGCCACUC---- ....(((.((((.(((..(...(((((((((((.......((((((((((((((((...)))))))).)).....)------))))))))).))))))).---)..))))))))))---- ( -50.01) >DroWil_CAF1 2727 120 - 1 CGAGGAUAUUGCAUGAUCAUCCGCCGGCGGUAUACCGCCCACAGCUGUGGCAGCUGCCACAGCAGCCUGCAUCUGGGCAGCAGCGGCAUACUGACCGGCGACAACGCCAGCGGCGCUAAC ...(((((((....))).))))(((((((((((.((((.....((((((((....)))))))).((((......))))....)))).)))))).))))).....((((...))))..... ( -57.20) >DroAna_CAF1 20363 101 - 1 CGAGGAUAUGGCAUGGUCGUCGGCCGGCGGCAGGCCACCCACGGCCGUGGCAGCUGCCACUGCGGCCUGCAUCUGG------GCGGCAUAGCCACCGGCU---CCGCCG------C---- (((.(((........))).)))(((((.(((.((((......))))(((((....)))))(((.((((......))------)).)))..))).))))).---......------.---- ( -51.40) >consensus CGAGGAGAUGGCAUGGUCAUCAGCUGGUGGCAUUCCUCCCGCCGCUGUAGCUGCUGCAACGGCAGCCUGCAUUUGA______GCGGCAUAAACACCGGCU___CCGCCAGCCACUC____ ....(((.((((.((((....((((((((..............(((((.((....)).))))).(((.((............))))).....)))))))).....))))))))))).... (-28.63 = -30.97 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:53 2006