Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,348,079 – 2,348,179 |
Length | 100 |
Max. P | 0.588907 |
Location | 2,348,079 – 2,348,179 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.21 |
Mean single sequence MFE | -21.91 |
Consensus MFE | -14.70 |
Energy contribution | -14.90 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.29 |
Mean z-score | -1.42 |
Structure conservation index | 0.67 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2348079 100 + 23771897 CCCCUUCCUUUAUCGGUAAACCAGAUACCCUUUCUUGAAAUUGAGGUAUAUUAACGAUGAAGUAAGAUAUGCAAAAUGUAAAAACUU-----------------UUGAUCACUGUUU ...(((.(((((((((....))..(((((...((........)))))))......))))))).))).....(((((.((....))))-----------------))).......... ( -16.20) >DroSec_CAF1 97190 100 + 1 CCCCUUCCUUUAUCGGUAAACCAGAUACCCUUUCUUGAAUUUGAGGUAUAUAAACGAUGAAGGAAGUUAUGCAAAACGUAAAAACUU-----------------UUAAUCAAUGUUU ...(((((((((((((....))..(((((...((........)))))))......)))))))))))(((((.....)))))......-----------------............. ( -22.00) >DroSim_CAF1 98141 99 + 1 CCCCUUCCUUUAUCGGUAAACCAGAUACCCUUUCUUGA-UUUGAGGUAUAUUAACGAUGAAGGAAGUUAUGCAAAAUGUAAAAACUU-----------------UUGAUCACUGUUU ...(((((((((((((....))..((((((........-...).)))))......))))))))))).....(((((.((....))))-----------------))).......... ( -22.30) >DroEre_CAF1 103887 116 + 1 CCCCUUCCUUUAUCGGUAAACCGCCUUCCCU-UCUGGAAACUGAGGUAUAUUAAUGAUGUAGAGAGAUAUGCAAAAAUUAGAAACUUCUAAAAAAGAGGAAUGUUUGAUUACUGCUU ...((..((.(((((((.....)))....((-((.(....).)))).........)))).))..))....(((..(((((((..(((((.....)))))....)))))))..))).. ( -23.70) >DroYak_CAF1 100422 116 + 1 UCUUUUUCUUUAUCGGUAAACCACCUUCCCU-UCUGGUAACUGGGGUAUAUUAACGAUAAAGGGAGAUGUGCUAAAAUUAAAAACUUCUGCAAAUGAGUAAUGUUUAUUCAUUGUUU ..(((..(((((((((((.(((.((...((.-...)).....))))).)))...))))))))..)))..(((.................)))((((((((.....)))))))).... ( -25.33) >consensus CCCCUUCCUUUAUCGGUAAACCAGAUACCCUUUCUUGAAAUUGAGGUAUAUUAACGAUGAAGGAAGAUAUGCAAAAAGUAAAAACUU_________________UUGAUCACUGUUU ...(((((((((((((....))......((((..........)))).........)))))))))))................................................... (-14.70 = -14.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:09 2006